Gene : Glyma.05G004400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31301:SF12 - LOB DOMAIN-CONTAINING PROTEIN 25 Genomic Order:  44
Name:  ? Glyma.05G004400 Secondary Identifier:  ? PAC:30523853
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G004400 0.5kb upstream 0.5kb upstream 2476 true Chr05: 366662-369137 Glycine max
Glyma.05G004400 0.5kb upstream 0.5kb upstream 500 false Chr05: 368638-369137 Glycine max
Glyma.05G004400 0.5kb downstream 0.5kb downstream 2476 true Chr05: 366162-368637 Glycine max
Glyma.05G004400 0.5kb downstream 0.5kb downstream 500 false Chr05: 366162-366661 Glycine max
Glyma.05G004400 1.0kb upstream 1.0kb upstream 2976 true Chr05: 366662-369637 Glycine max
Glyma.05G004400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 368638-369637 Glycine max
Glyma.05G004400 1.0kb downstream 1.0kb downstream 2976 true Chr05: 365662-368637 Glycine max
Glyma.05G004400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 365662-366661 Glycine max
Glyma.05G004400 2.0kb upstream 2.0kb upstream 3976 true Chr05: 366662-370637 Glycine max
Glyma.05G004400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 368638-370637 Glycine max
Glyma.05G004400 2.0kb downstream 2.0kb downstream 3976 true Chr05: 364662-368637 Glycine max
Glyma.05G004400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 364662-366661 Glycine max
Glyma.05G004400 5.0kb upstream 5.0kb upstream 6976 true Chr05: 366662-373637 Glycine max
Glyma.05G004400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 368638-373637 Glycine max
Glyma.05G004400 5.0kb downstream 5.0kb downstream 6976 true Chr05: 361662-368637 Glycine max
Glyma.05G004400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 361662-366661 Glycine max
Glyma.05G004400 10.0kb upstream 10.0kb upstream 11976 true Chr05: 366662-378637 Glycine max
Glyma.05G004400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 368638-378637 Glycine max
Glyma.05G004400 10.0kb downstream 10.0kb downstream 11976 true Chr05: 356662-368637 Glycine max
Glyma.05G004400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 356662-366661 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255509 5265 Fabidae View MSA
124070294 5270 Rosid View MSA
123752210 5271 Pentapetalae View MSA
122796223 5272 Eudicot View MSA
122048133 5273 Angiosperm View MSA
121350574 5274 Embryophyte View MSA
123381803 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.620564 0.0 5.19957    
cufflinks 1.31495 0.0 7.83766    
cufflinks 0.0554125 0.0 0.240362 Low Low
cufflinks 0.776818 0.0 4.94806    
cufflinks 0.86969 0.0 4.2625    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.81711 0.0 21.8754   High
cufflinks 1.6634 0.0 11.7328    
cufflinks 0.007     Low Low
cufflinks 0.348       High
cufflinks 0.062     Low  
cufflinks 0.102        
cufflinks 0.029     Low  
cufflinks 0.076        
cufflinks 0.007     Low Low
cufflinks 0.11        
cufflinks 0.052     Low  
cufflinks 0.075     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.207        
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.515       High
cufflinks 0.004     Low Low
cufflinks 0.229        

0 Strain