Gene : Glyma.04G254700 G. max Wm82.a2.v1

Defline:  (1 of 2) PTHR24074:SF10 - PROTEIN DNJ-29, ISOFORM B Genomic Order:  2547
Name:  ? Glyma.04G254700 Secondary Identifier:  ? PAC:30488869

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G254700 0.5kb upstream 0.5kb upstream 3892 true Chr04: 52128480-52132371 Glycine max
Glyma.04G254700 0.5kb upstream 0.5kb upstream 500 false Chr04: 52131872-52132371 Glycine max
Glyma.04G254700 0.5kb downstream 0.5kb downstream 3892 true Chr04: 52127980-52131871 Glycine max
Glyma.04G254700 0.5kb downstream 0.5kb downstream 500 false Chr04: 52127980-52128479 Glycine max
Glyma.04G254700 1.0kb upstream 1.0kb upstream 4392 true Chr04: 52128480-52132871 Glycine max
Glyma.04G254700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 52131872-52132871 Glycine max
Glyma.04G254700 1.0kb downstream 1.0kb downstream 4392 true Chr04: 52127480-52131871 Glycine max
Glyma.04G254700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 52127480-52128479 Glycine max
Glyma.04G254700 2.0kb upstream 2.0kb upstream 5392 true Chr04: 52128480-52133871 Glycine max
Glyma.04G254700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 52131872-52133871 Glycine max
Glyma.04G254700 2.0kb downstream 2.0kb downstream 5392 true Chr04: 52126480-52131871 Glycine max
Glyma.04G254700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 52126480-52128479 Glycine max
Glyma.04G254700 5.0kb upstream 5.0kb upstream 8392 true Chr04: 52128480-52136871 Glycine max
Glyma.04G254700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 52131872-52136871 Glycine max
Glyma.04G254700 5.0kb downstream 5.0kb downstream 8392 true Chr04: 52123480-52131871 Glycine max
Glyma.04G254700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 52123480-52128479 Glycine max
Glyma.04G254700 10.0kb upstream 10.0kb upstream 13392 true Chr04: 52128480-52141871 Glycine max
Glyma.04G254700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 52131872-52141871 Glycine max
Glyma.04G254700 10.0kb downstream 10.0kb downstream 13392 true Chr04: 52118480-52131871 Glycine max
Glyma.04G254700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 52118480-52128479 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027264 5273 Angiosperm View MSA
122248976 5265 Fabidae Singleton cluster - no MSA
123992474 5270 Rosid Singleton cluster - no MSA
123567339 5271 Pentapetalae Singleton cluster - no MSA
122602091 5272 Eudicot Singleton cluster - no MSA
123429067 5275 Viridiplantae View MSA
121348781 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.12532 0.0 42.5748   High
cufflinks 1.69433 0.0 17.0003    
cufflinks 2.25866 0.0 19.799    
cufflinks 2.20098 0.0 22.0051    
cufflinks 1.05978 0.0 11.2564   Low
cufflinks 2.32095 0.0 19.4643    
cufflinks 0.978817 0.0 7.8201   Low
cufflinks 2.71825 0.0 22.8847    
cufflinks 1.8624 0.0 17.2041    
cufflinks 0.056     Low Low
cufflinks 0.136        
cufflinks 0.146        
cufflinks 0.071     Low Low
cufflinks 0.062     Low Low
cufflinks 0.077        
cufflinks 0.162        
cufflinks 0.092        
cufflinks 0.187        
cufflinks 0.149        
cufflinks 0.233       High
cufflinks 0.088        
cufflinks 0.247       High
cufflinks 0.229       High
cufflinks 0.159        
cufflinks 0.209       High
cufflinks 0.061     Low Low

0 Strain