Gene : Glyma.05G035900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23079:SF5 - RNA-DEPENDENT RNA POLYMERASE 2 Genomic Order:  359
Name:  ? Glyma.05G035900 Secondary Identifier:  ? PAC:30525152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G035900 0.5kb upstream 0.5kb upstream 5855 true Chr05: 3162408-3168262 Glycine max
Glyma.05G035900 0.5kb upstream 0.5kb upstream 500 false Chr05: 3162408-3162907 Glycine max
Glyma.05G035900 0.5kb downstream 0.5kb downstream 5855 true Chr05: 3162908-3168762 Glycine max
Glyma.05G035900 0.5kb downstream 0.5kb downstream 500 false Chr05: 3168263-3168762 Glycine max
Glyma.05G035900 1.0kb upstream 1.0kb upstream 6355 true Chr05: 3161908-3168262 Glycine max
Glyma.05G035900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3161908-3162907 Glycine max
Glyma.05G035900 1.0kb downstream 1.0kb downstream 6355 true Chr05: 3162908-3169262 Glycine max
Glyma.05G035900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3168263-3169262 Glycine max
Glyma.05G035900 2.0kb upstream 2.0kb upstream 7355 true Chr05: 3160908-3168262 Glycine max
Glyma.05G035900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3160908-3162907 Glycine max
Glyma.05G035900 2.0kb downstream 2.0kb downstream 7355 true Chr05: 3162908-3170262 Glycine max
Glyma.05G035900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3168263-3170262 Glycine max
Glyma.05G035900 5.0kb upstream 5.0kb upstream 10355 true Chr05: 3157908-3168262 Glycine max
Glyma.05G035900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3157908-3162907 Glycine max
Glyma.05G035900 5.0kb downstream 5.0kb downstream 10355 true Chr05: 3162908-3173262 Glycine max
Glyma.05G035900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3168263-3173262 Glycine max
Glyma.05G035900 10.0kb upstream 10.0kb upstream 15355 true Chr05: 3152908-3168262 Glycine max
Glyma.05G035900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3152908-3162907 Glycine max
Glyma.05G035900 10.0kb downstream 10.0kb downstream 15355 true Chr05: 3162908-3178262 Glycine max
Glyma.05G035900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3168263-3178262 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306154 5265 Fabidae View MSA
124065042 5270 Rosid View MSA
123747025 5271 Pentapetalae View MSA
122788970 5272 Eudicot View MSA
122044390 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.418323 0.0 2.46368   Low
cufflinks 2.76617 0.0 9.5929    
cufflinks 1.54843 0.0 6.23664    
cufflinks 1.99238 0.0 7.61627    
cufflinks 1.79351 0.0 7.09904    
cufflinks 0.523246 0.0 2.84462   Low
cufflinks 3.20788 0.0 10.9594   High
cufflinks 1.56663 0.0 6.41841    
cufflinks 1.65174 0.0 6.74964    
cufflinks 0.315        
cufflinks 0.031     Low Low
cufflinks 0.659        
cufflinks 0.495        
cufflinks 0.506        
cufflinks 0.091        
cufflinks 0.324        
cufflinks 0.17        
cufflinks 0.784       High
cufflinks 1.21       High
cufflinks 0.283        
cufflinks 0.072       Low
cufflinks 0.404        
cufflinks 0.328        
cufflinks 0.045     Low Low
cufflinks 0.285        
cufflinks 0.125        

0 Strain