Gene : Glyma.05G053100 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11679//PTHR11679:SF38 - VESICLE PROTEIN SORTING-ASSOCIATED Genomic Order:  531
Name:  ? Glyma.05G053100 Secondary Identifier:  ? PAC:30524028
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G053100 0.5kb upstream 0.5kb upstream 15003 true Chr05: 4765501-4780503 Glycine max
Glyma.05G053100 0.5kb upstream 0.5kb upstream 500 false Chr05: 4765501-4766000 Glycine max
Glyma.05G053100 0.5kb downstream 0.5kb downstream 15003 true Chr05: 4766001-4781003 Glycine max
Glyma.05G053100 0.5kb downstream 0.5kb downstream 500 false Chr05: 4780504-4781003 Glycine max
Glyma.05G053100 1.0kb upstream 1.0kb upstream 15503 true Chr05: 4765001-4780503 Glycine max
Glyma.05G053100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4765001-4766000 Glycine max
Glyma.05G053100 1.0kb downstream 1.0kb downstream 15503 true Chr05: 4766001-4781503 Glycine max
Glyma.05G053100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4780504-4781503 Glycine max
Glyma.05G053100 2.0kb upstream 2.0kb upstream 16503 true Chr05: 4764001-4780503 Glycine max
Glyma.05G053100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4764001-4766000 Glycine max
Glyma.05G053100 2.0kb downstream 2.0kb downstream 16503 true Chr05: 4766001-4782503 Glycine max
Glyma.05G053100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4780504-4782503 Glycine max
Glyma.05G053100 5.0kb upstream 5.0kb upstream 19503 true Chr05: 4761001-4780503 Glycine max
Glyma.05G053100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4761001-4766000 Glycine max
Glyma.05G053100 5.0kb downstream 5.0kb downstream 19503 true Chr05: 4766001-4785503 Glycine max
Glyma.05G053100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4780504-4785503 Glycine max
Glyma.05G053100 10.0kb upstream 10.0kb upstream 24503 true Chr05: 4756001-4780503 Glycine max
Glyma.05G053100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4756001-4766000 Glycine max
Glyma.05G053100 10.0kb downstream 10.0kb downstream 24503 true Chr05: 4766001-4790503 Glycine max
Glyma.05G053100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4780504-4790503 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307701 5265 Fabidae View MSA
124073008 5270 Rosid View MSA
123752933 5271 Pentapetalae View MSA
122792100 5272 Eudicot View MSA
122047096 5273 Angiosperm View MSA
121350435 5274 Embryophyte View MSA
123426000 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.7562 0.0 50.4795    
cufflinks 15.3995 0.0 41.1885   Low
cufflinks 20.8634 0.0 56.5332 High  
cufflinks 21.9914 0.0 59.72 High  
cufflinks 17.1952 0.0 46.1115    
cufflinks 21.4211 0.0 58.0277    
cufflinks 19.3462 0.0 52.1117    
cufflinks 19.0841 0.0 51.4156    
cufflinks 23.529 0.0 64.1523 High High
cufflinks 4.362        
cufflinks 4.727        
cufflinks 4.175        
cufflinks 4.497        
cufflinks 4.113        
cufflinks 3.57       Low
cufflinks 4.43        
cufflinks 4.183        
cufflinks 4.571        
cufflinks 3.412       Low
cufflinks 4.275        
cufflinks 4.379        
cufflinks 4.182        
cufflinks 3.2       Low
cufflinks 4.554        
cufflinks 3.947        
cufflinks 5.505       High

0 Strain