Gene : Glyma.05G046400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR10894 - NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 Genomic Order:  464
Name:  ? Glyma.05G046400 Secondary Identifier:  ? PAC:30524888
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G046400 0.5kb upstream 0.5kb upstream 3870 true Chr05: 4137711-4141580 Glycine max
Glyma.05G046400 0.5kb upstream 0.5kb upstream 500 false Chr05: 4141081-4141580 Glycine max
Glyma.05G046400 0.5kb downstream 0.5kb downstream 3870 true Chr05: 4137211-4141080 Glycine max
Glyma.05G046400 0.5kb downstream 0.5kb downstream 500 false Chr05: 4137211-4137710 Glycine max
Glyma.05G046400 1.0kb upstream 1.0kb upstream 4370 true Chr05: 4137711-4142080 Glycine max
Glyma.05G046400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4141081-4142080 Glycine max
Glyma.05G046400 1.0kb downstream 1.0kb downstream 4370 true Chr05: 4136711-4141080 Glycine max
Glyma.05G046400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4136711-4137710 Glycine max
Glyma.05G046400 2.0kb upstream 2.0kb upstream 5370 true Chr05: 4137711-4143080 Glycine max
Glyma.05G046400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4141081-4143080 Glycine max
Glyma.05G046400 2.0kb downstream 2.0kb downstream 5370 true Chr05: 4135711-4141080 Glycine max
Glyma.05G046400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4135711-4137710 Glycine max
Glyma.05G046400 5.0kb upstream 5.0kb upstream 8370 true Chr05: 4137711-4146080 Glycine max
Glyma.05G046400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4141081-4146080 Glycine max
Glyma.05G046400 5.0kb downstream 5.0kb downstream 8370 true Chr05: 4132711-4141080 Glycine max
Glyma.05G046400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4132711-4137710 Glycine max
Glyma.05G046400 10.0kb upstream 10.0kb upstream 13370 true Chr05: 4137711-4151080 Glycine max
Glyma.05G046400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4141081-4151080 Glycine max
Glyma.05G046400 10.0kb downstream 10.0kb downstream 13370 true Chr05: 4127711-4141080 Glycine max
Glyma.05G046400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4127711-4137710 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310756 5265 Fabidae View MSA
124068529 5270 Rosid View MSA
123741433 5271 Pentapetalae View MSA
122793119 5272 Eudicot View MSA
122042292 5273 Angiosperm View MSA
121349540 5274 Embryophyte View MSA
123424801 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.6955 0.0 138.042 High  
cufflinks 46.2355 0.0 133.232 High  
cufflinks 15.9972 0.0 42.7206   Low
cufflinks 29.001 0.0 79.6639 High  
cufflinks 65.1842 0.0 197.405 High High
cufflinks 38.9116 0.0 109.684 High  
cufflinks 53.9065 0.0 158.3 High  
cufflinks 32.3436 0.0 89.645 High  
cufflinks 45.0935 0.0 129.544 High  
cufflinks 15.595     High  
cufflinks 4.32       Low
cufflinks 22.936     High  
cufflinks 67.886     High High
cufflinks 93.481     High High
cufflinks 7.346     High  
cufflinks 17.445     High  
cufflinks 14.183     High  
cufflinks 17.882     High  
cufflinks 34.258     High  
cufflinks 10.233     High  
cufflinks 8.56     High  
cufflinks 13.172     High  
cufflinks 20.453     High  
cufflinks 5.855       Low
cufflinks 15.529     High  
cufflinks 14.992     High  

0 Strain