Gene : Glyma.05G048900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11669:SF5 - REPLICATION FACTOR C SUBUNIT 2 Genomic Order:  489
Name:  ? Glyma.05G048900 Secondary Identifier:  ? PAC:30524347
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G048900 0.5kb upstream 0.5kb upstream 4048 true Chr05: 4351405-4355452 Glycine max
Glyma.05G048900 0.5kb upstream 0.5kb upstream 500 false Chr05: 4351405-4351904 Glycine max
Glyma.05G048900 0.5kb downstream 0.5kb downstream 4048 true Chr05: 4351905-4355952 Glycine max
Glyma.05G048900 0.5kb downstream 0.5kb downstream 500 false Chr05: 4355453-4355952 Glycine max
Glyma.05G048900 1.0kb upstream 1.0kb upstream 4548 true Chr05: 4350905-4355452 Glycine max
Glyma.05G048900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4350905-4351904 Glycine max
Glyma.05G048900 1.0kb downstream 1.0kb downstream 4548 true Chr05: 4351905-4356452 Glycine max
Glyma.05G048900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4355453-4356452 Glycine max
Glyma.05G048900 2.0kb upstream 2.0kb upstream 5548 true Chr05: 4349905-4355452 Glycine max
Glyma.05G048900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4349905-4351904 Glycine max
Glyma.05G048900 2.0kb downstream 2.0kb downstream 5548 true Chr05: 4351905-4357452 Glycine max
Glyma.05G048900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4355453-4357452 Glycine max
Glyma.05G048900 5.0kb upstream 5.0kb upstream 8548 true Chr05: 4346905-4355452 Glycine max
Glyma.05G048900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4346905-4351904 Glycine max
Glyma.05G048900 5.0kb downstream 5.0kb downstream 8548 true Chr05: 4351905-4360452 Glycine max
Glyma.05G048900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4355453-4360452 Glycine max
Glyma.05G048900 10.0kb upstream 10.0kb upstream 13548 true Chr05: 4341905-4355452 Glycine max
Glyma.05G048900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4341905-4351904 Glycine max
Glyma.05G048900 10.0kb downstream 10.0kb downstream 13548 true Chr05: 4351905-4365452 Glycine max
Glyma.05G048900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4355453-4365452 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307868 5265 Fabidae View MSA
124067480 5270 Rosid View MSA
123736933 5271 Pentapetalae View MSA
122797574 5272 Eudicot View MSA
122046702 5273 Angiosperm View MSA
121346724 5274 Embryophyte View MSA
123424586 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.86133 0.0 27.8243    
cufflinks 12.3203 0.0 43.9532   High
cufflinks 4.86454 0.0 19.3113   Low
cufflinks 6.75073 0.0 28.2709    
cufflinks 10.1951 0.0 37.4857    
cufflinks 8.49698 0.0 32.6518    
cufflinks 6.17486 0.0 25.9359    
cufflinks 6.84029 0.0 27.8342    
cufflinks 11.0826 0.0 40.2873   High
cufflinks 0.974        
cufflinks 0.956        
cufflinks 1.16        
cufflinks 1.99        
cufflinks 2.447       High
cufflinks 1.737        
cufflinks 1.083        
cufflinks 1.733        
cufflinks 0.99        
cufflinks 2.769       High
cufflinks 0.68       Low
cufflinks 1.435        
cufflinks 0.809       Low
cufflinks 2.268       High
cufflinks 1.583        
cufflinks 0.769       Low
cufflinks 1.852        

0 Strain