Gene : Glyma.05G040600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Genomic Order:  406
Name:  ? Glyma.05G040600 Secondary Identifier:  ? PAC:30523820
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G040600 0.5kb upstream 0.5kb upstream 4908 true Chr05: 3643493-3648400 Glycine max
Glyma.05G040600 0.5kb upstream 0.5kb upstream 500 false Chr05: 3647901-3648400 Glycine max
Glyma.05G040600 0.5kb downstream 0.5kb downstream 4908 true Chr05: 3642993-3647900 Glycine max
Glyma.05G040600 0.5kb downstream 0.5kb downstream 500 false Chr05: 3642993-3643492 Glycine max
Glyma.05G040600 1.0kb upstream 1.0kb upstream 5408 true Chr05: 3643493-3648900 Glycine max
Glyma.05G040600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3647901-3648900 Glycine max
Glyma.05G040600 1.0kb downstream 1.0kb downstream 5408 true Chr05: 3642493-3647900 Glycine max
Glyma.05G040600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3642493-3643492 Glycine max
Glyma.05G040600 2.0kb upstream 2.0kb upstream 6408 true Chr05: 3643493-3649900 Glycine max
Glyma.05G040600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3647901-3649900 Glycine max
Glyma.05G040600 2.0kb downstream 2.0kb downstream 6408 true Chr05: 3641493-3647900 Glycine max
Glyma.05G040600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3641493-3643492 Glycine max
Glyma.05G040600 5.0kb upstream 5.0kb upstream 9408 true Chr05: 3643493-3652900 Glycine max
Glyma.05G040600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3647901-3652900 Glycine max
Glyma.05G040600 5.0kb downstream 5.0kb downstream 9408 true Chr05: 3638493-3647900 Glycine max
Glyma.05G040600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3638493-3643492 Glycine max
Glyma.05G040600 10.0kb upstream 10.0kb upstream 14408 true Chr05: 3643493-3657900 Glycine max
Glyma.05G040600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3647901-3657900 Glycine max
Glyma.05G040600 10.0kb downstream 10.0kb downstream 14408 true Chr05: 3633493-3647900 Glycine max
Glyma.05G040600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3633493-3643492 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299156 5265 Fabidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.61817 0.0 24.5505    
cufflinks 6.86042 0.0 22.54    
cufflinks 6.99875 0.0 23.0064    
cufflinks 8.72819 0.0 27.5879    
cufflinks 7.48272 0.0 24.0186    
cufflinks 5.22978 0.0 25.8485   Low
cufflinks 6.88951 0.0 22.5658    
cufflinks 10.5189 0.0 32.3372   High
cufflinks 6.95165 0.0 22.7764    
cufflinks 1.139        
cufflinks 3.954       High
cufflinks 1.229        
cufflinks 1.333        
cufflinks 1.067        
cufflinks 3.525       High
cufflinks 1.158        
cufflinks 1.521        
cufflinks 0.87       Low
cufflinks 2.159        
cufflinks 0.818       Low
cufflinks 3.992       High
cufflinks 1.083        
cufflinks 1.168        
cufflinks 3.267       High
cufflinks 0.961        
cufflinks 2.362        

0 Strain