Gene : Glyma.05G135300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13861 - VACUOLAR ATP SYNTHASE SUBUNIT F Genomic Order:  1353
Name:  ? Glyma.05G135300 Secondary Identifier:  ? PAC:30524438
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6126 Glycine max pathologic  
Gmax PWY-7219 Glycine max pathologic  
Gmax PWY-7229 Glycine max pathologic  
Gmax PWY-841 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G135300 0.5kb upstream 0.5kb upstream 4173 true Chr05: 32773676-32777848 Glycine max
Glyma.05G135300 0.5kb upstream 0.5kb upstream 500 false Chr05: 32773676-32774175 Glycine max
Glyma.05G135300 0.5kb downstream 0.5kb downstream 4173 true Chr05: 32774176-32778348 Glycine max
Glyma.05G135300 0.5kb downstream 0.5kb downstream 500 false Chr05: 32777849-32778348 Glycine max
Glyma.05G135300 1.0kb upstream 1.0kb upstream 4673 true Chr05: 32773176-32777848 Glycine max
Glyma.05G135300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 32773176-32774175 Glycine max
Glyma.05G135300 1.0kb downstream 1.0kb downstream 4673 true Chr05: 32774176-32778848 Glycine max
Glyma.05G135300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 32777849-32778848 Glycine max
Glyma.05G135300 2.0kb upstream 2.0kb upstream 5673 true Chr05: 32772176-32777848 Glycine max
Glyma.05G135300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 32772176-32774175 Glycine max
Glyma.05G135300 2.0kb downstream 2.0kb downstream 5673 true Chr05: 32774176-32779848 Glycine max
Glyma.05G135300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 32777849-32779848 Glycine max
Glyma.05G135300 5.0kb upstream 5.0kb upstream 8673 true Chr05: 32769176-32777848 Glycine max
Glyma.05G135300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 32769176-32774175 Glycine max
Glyma.05G135300 5.0kb downstream 5.0kb downstream 8673 true Chr05: 32774176-32782848 Glycine max
Glyma.05G135300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 32777849-32782848 Glycine max
Glyma.05G135300 10.0kb upstream 10.0kb upstream 13673 true Chr05: 32764176-32777848 Glycine max
Glyma.05G135300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 32764176-32774175 Glycine max
Glyma.05G135300 10.0kb downstream 10.0kb downstream 13673 true Chr05: 32774176-32787848 Glycine max
Glyma.05G135300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 32777849-32787848 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309846 5265 Fabidae View MSA
124062785 5270 Rosid View MSA
123736748 5271 Pentapetalae View MSA
122792211 5272 Eudicot View MSA
122044374 5273 Angiosperm View MSA
121344263 5274 Embryophyte View MSA
123428206 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.125 0.0 176.311 High Low
cufflinks 57.6786 0.0 202.415 High  
cufflinks 55.2129 0.0 190.278 High Low
cufflinks 67.5811 0.0 238.792 High  
cufflinks 82.6394 0.0 299.524 High  
cufflinks 91.2202 0.0 338.285 High High
cufflinks 84.687 0.0 311.127 High High
cufflinks 71.3592 0.0 252.776 High  
cufflinks 69.5582 0.0 247.926 High  
cufflinks 7.171       High
cufflinks 2.779       Low
cufflinks 5.481        
cufflinks 8.434     High High
cufflinks 9.112     High High
cufflinks 2.456       Low
cufflinks 4.233        
cufflinks 3.903        
cufflinks 7.742     High High
cufflinks 5.103        
cufflinks 3.905        
cufflinks 3.874        
cufflinks 4.1        
cufflinks 4.102        
cufflinks 4.256        
cufflinks 3.974        
cufflinks 4.827        

0 Strain