Gene : Glyma.05G149300 G. max Wm82.a2.v1
Defline:  (1 of 3) KOG1781 - Small Nuclear ribonucleoprotein splicing factor Genomic Order:  1493
Name:  ? Glyma.05G149300 Secondary Identifier:  ? PAC:30526345
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G149300 0.5kb upstream 0.5kb upstream 4115 true Chr05: 34357418-34361532 Glycine max
Glyma.05G149300 0.5kb upstream 0.5kb upstream 500 false Chr05: 34361033-34361532 Glycine max
Glyma.05G149300 0.5kb downstream 0.5kb downstream 4115 true Chr05: 34356918-34361032 Glycine max
Glyma.05G149300 0.5kb downstream 0.5kb downstream 500 false Chr05: 34356918-34357417 Glycine max
Glyma.05G149300 1.0kb upstream 1.0kb upstream 4615 true Chr05: 34357418-34362032 Glycine max
Glyma.05G149300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 34361033-34362032 Glycine max
Glyma.05G149300 1.0kb downstream 1.0kb downstream 4615 true Chr05: 34356418-34361032 Glycine max
Glyma.05G149300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 34356418-34357417 Glycine max
Glyma.05G149300 2.0kb upstream 2.0kb upstream 5615 true Chr05: 34357418-34363032 Glycine max
Glyma.05G149300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 34361033-34363032 Glycine max
Glyma.05G149300 2.0kb downstream 2.0kb downstream 5615 true Chr05: 34355418-34361032 Glycine max
Glyma.05G149300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 34355418-34357417 Glycine max
Glyma.05G149300 5.0kb upstream 5.0kb upstream 8615 true Chr05: 34357418-34366032 Glycine max
Glyma.05G149300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 34361033-34366032 Glycine max
Glyma.05G149300 5.0kb downstream 5.0kb downstream 8615 true Chr05: 34352418-34361032 Glycine max
Glyma.05G149300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 34352418-34357417 Glycine max
Glyma.05G149300 10.0kb upstream 10.0kb upstream 13615 true Chr05: 34357418-34371032 Glycine max
Glyma.05G149300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 34361033-34371032 Glycine max
Glyma.05G149300 10.0kb downstream 10.0kb downstream 13615 true Chr05: 34347418-34361032 Glycine max
Glyma.05G149300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 34347418-34357417 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306096 5265 Fabidae View MSA
124062559 5270 Rosid View MSA
123737808 5271 Pentapetalae View MSA
122791526 5272 Eudicot View MSA
122051368 5273 Angiosperm View MSA
121349484 5274 Embryophyte View MSA
123423999 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.8597 0.0 52.488   Low
cufflinks 26.3348 0.0 71.3744 High  
cufflinks 18.7537 0.0 52.0103   Low
cufflinks 19.0 0.0 52.7296   Low
cufflinks 26.1049 0.0 70.8127 High  
cufflinks 32.1216 0.0 86.2854 High High
cufflinks 33.9484 0.0 91.1573 High High
cufflinks 22.3637 0.0 61.2273 High  
cufflinks 24.7682 0.0 67.3456 High  
cufflinks 3.55        
cufflinks 3.21        
cufflinks 3.158        
cufflinks 6.461       High
cufflinks 6.699     High High
cufflinks 2.237       Low
cufflinks 4.834        
cufflinks 2.622       Low
cufflinks 3.826        
cufflinks 4.187        
cufflinks 5.217        
cufflinks 3.051        
cufflinks 4.94        
cufflinks 4.63        
cufflinks 3.535        
cufflinks 5.179        
cufflinks 3.774        

0 Strain