Gene : Glyma.05G163100 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR28141:SF1 - 2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE Genomic Order:  1631
Name:  ? Glyma.05G163100 Secondary Identifier:  ? PAC:30523645
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G163100 0.5kb upstream 0.5kb upstream 1897 true Chr05: 35422874-35424770 Glycine max
Glyma.05G163100 0.5kb upstream 0.5kb upstream 500 false Chr05: 35422874-35423373 Glycine max
Glyma.05G163100 0.5kb downstream 0.5kb downstream 1897 true Chr05: 35423374-35425270 Glycine max
Glyma.05G163100 0.5kb downstream 0.5kb downstream 500 false Chr05: 35424771-35425270 Glycine max
Glyma.05G163100 1.0kb upstream 1.0kb upstream 2397 true Chr05: 35422374-35424770 Glycine max
Glyma.05G163100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35422374-35423373 Glycine max
Glyma.05G163100 1.0kb downstream 1.0kb downstream 2397 true Chr05: 35423374-35425770 Glycine max
Glyma.05G163100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35424771-35425770 Glycine max
Glyma.05G163100 2.0kb upstream 2.0kb upstream 3397 true Chr05: 35421374-35424770 Glycine max
Glyma.05G163100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35421374-35423373 Glycine max
Glyma.05G163100 2.0kb downstream 2.0kb downstream 3397 true Chr05: 35423374-35426770 Glycine max
Glyma.05G163100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35424771-35426770 Glycine max
Glyma.05G163100 5.0kb upstream 5.0kb upstream 6397 true Chr05: 35418374-35424770 Glycine max
Glyma.05G163100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35418374-35423373 Glycine max
Glyma.05G163100 5.0kb downstream 5.0kb downstream 6397 true Chr05: 35423374-35429770 Glycine max
Glyma.05G163100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35424771-35429770 Glycine max
Glyma.05G163100 10.0kb upstream 10.0kb upstream 11397 true Chr05: 35413374-35424770 Glycine max
Glyma.05G163100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35413374-35423373 Glycine max
Glyma.05G163100 10.0kb downstream 10.0kb downstream 11397 true Chr05: 35423374-35434770 Glycine max
Glyma.05G163100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35424771-35434770 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302136 5265 Fabidae View MSA
124065513 5270 Rosid View MSA
123741302 5271 Pentapetalae View MSA
122793487 5272 Eudicot View MSA
122041561 5273 Angiosperm View MSA
123429145 5275 Viridiplantae View MSA
121349919 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.3985 0.0 52.2923    
cufflinks 7.71 0.0 22.6127    
cufflinks 11.1813 0.0 31.474    
cufflinks 11.4745 0.0 32.1199    
cufflinks 15.5913 0.0 42.4421    
cufflinks 8.21338 0.0 23.8235    
cufflinks 43.7452 0.0 117.566 High High
cufflinks 5.72772 0.0 17.5028   Low
cufflinks 10.7637 0.0 30.2621    
cufflinks 3.63        
cufflinks 1.997        
cufflinks 6.58       High
cufflinks 6.388       High
cufflinks 6.583       High
cufflinks 1.622       Low
cufflinks 3.576        
cufflinks 2.419        
cufflinks 8.395     High High
cufflinks 5.05        
cufflinks 2.671        
cufflinks 2.439        
cufflinks 2.736        
cufflinks 3.2        
cufflinks 1.624       Low
cufflinks 2.548        
cufflinks 2.131        

0 Strain