Gene : Glyma.05G161200 G. max Wm82.a2.v1

Defline:  (1 of 2) PTHR31161:SF7 - F28N24.3 PROTEIN Genomic Order:  1612
Name:  ? Glyma.05G161200 Secondary Identifier:  ? PAC:30525129

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G161200 0.5kb upstream 0.5kb upstream 1883 true Chr05: 35292936-35294818 Glycine max
Glyma.05G161200 0.5kb upstream 0.5kb upstream 500 false Chr05: 35294319-35294818 Glycine max
Glyma.05G161200 0.5kb downstream 0.5kb downstream 1883 true Chr05: 35292436-35294318 Glycine max
Glyma.05G161200 0.5kb downstream 0.5kb downstream 500 false Chr05: 35292436-35292935 Glycine max
Glyma.05G161200 1.0kb upstream 1.0kb upstream 2383 true Chr05: 35292936-35295318 Glycine max
Glyma.05G161200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35294319-35295318 Glycine max
Glyma.05G161200 1.0kb downstream 1.0kb downstream 2383 true Chr05: 35291936-35294318 Glycine max
Glyma.05G161200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35291936-35292935 Glycine max
Glyma.05G161200 2.0kb upstream 2.0kb upstream 3383 true Chr05: 35292936-35296318 Glycine max
Glyma.05G161200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35294319-35296318 Glycine max
Glyma.05G161200 2.0kb downstream 2.0kb downstream 3383 true Chr05: 35290936-35294318 Glycine max
Glyma.05G161200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35290936-35292935 Glycine max
Glyma.05G161200 5.0kb upstream 5.0kb upstream 6383 true Chr05: 35292936-35299318 Glycine max
Glyma.05G161200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35294319-35299318 Glycine max
Glyma.05G161200 5.0kb downstream 5.0kb downstream 6383 true Chr05: 35287936-35294318 Glycine max
Glyma.05G161200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35287936-35292935 Glycine max
Glyma.05G161200 10.0kb upstream 10.0kb upstream 11383 true Chr05: 35292936-35304318 Glycine max
Glyma.05G161200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35294319-35304318 Glycine max
Glyma.05G161200 10.0kb downstream 10.0kb downstream 11383 true Chr05: 35282936-35294318 Glycine max
Glyma.05G161200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35282936-35292935 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041109 5273 Angiosperm View MSA
122308887 5265 Fabidae View MSA
124063143 5270 Rosid View MSA
123743668 5271 Pentapetalae View MSA
122791275 5272 Eudicot View MSA
121351569 5274 Embryophyte View MSA
123382231 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0290309 0.0 0.123715 Low Low
cufflinks 3.81545 0.0 11.7129    
cufflinks 0.680347 0.0 2.49898    
cufflinks 0.318077 0.0 1.20892    
cufflinks 2.81517 0.0 9.0073    
cufflinks 1.38128 0.0 4.82311    
cufflinks 1.42357 0.0 4.95329    
cufflinks 3.38459 0.0 10.5266    
cufflinks 1.82062 0.0 6.17596    
cufflinks 2.206        
cufflinks 2.283        
cufflinks 3.928       High
cufflinks 1.559        
cufflinks 1.372        
cufflinks 0.828        
cufflinks 0.803        
cufflinks 2.091        
cufflinks 3.169        
cufflinks 5.603       High
cufflinks 0.555       Low
cufflinks 3.881       High
cufflinks 0.619       Low
cufflinks 0.592       Low
cufflinks 1.504        
cufflinks 0.573       Low
cufflinks 4.266       High

0 Strain