Gene : Glyma.05G187000 G. max Wm82.a2.v1
Defline:  (1 of 2) PF00076//PF15519 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // linker between RRM2 and RRM3 domains in RBM39 protein (RBM39linker) Genomic Order:  1870
Name:  ? Glyma.05G187000 Secondary Identifier:  ? PAC:30525448
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G187000 0.5kb upstream 0.5kb upstream 8556 true Chr05: 37340020-37348575 Glycine max
Glyma.05G187000 0.5kb upstream 0.5kb upstream 500 false Chr05: 37340020-37340519 Glycine max
Glyma.05G187000 0.5kb downstream 0.5kb downstream 8556 true Chr05: 37340520-37349075 Glycine max
Glyma.05G187000 0.5kb downstream 0.5kb downstream 500 false Chr05: 37348576-37349075 Glycine max
Glyma.05G187000 1.0kb upstream 1.0kb upstream 9056 true Chr05: 37339520-37348575 Glycine max
Glyma.05G187000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37339520-37340519 Glycine max
Glyma.05G187000 1.0kb downstream 1.0kb downstream 9056 true Chr05: 37340520-37349575 Glycine max
Glyma.05G187000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37348576-37349575 Glycine max
Glyma.05G187000 2.0kb upstream 2.0kb upstream 10056 true Chr05: 37338520-37348575 Glycine max
Glyma.05G187000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37338520-37340519 Glycine max
Glyma.05G187000 2.0kb downstream 2.0kb downstream 10056 true Chr05: 37340520-37350575 Glycine max
Glyma.05G187000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37348576-37350575 Glycine max
Glyma.05G187000 5.0kb upstream 5.0kb upstream 13056 true Chr05: 37335520-37348575 Glycine max
Glyma.05G187000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37335520-37340519 Glycine max
Glyma.05G187000 5.0kb downstream 5.0kb downstream 13056 true Chr05: 37340520-37353575 Glycine max
Glyma.05G187000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37348576-37353575 Glycine max
Glyma.05G187000 10.0kb upstream 10.0kb upstream 18056 true Chr05: 37330520-37348575 Glycine max
Glyma.05G187000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37330520-37340519 Glycine max
Glyma.05G187000 10.0kb downstream 10.0kb downstream 18056 true Chr05: 37340520-37358575 Glycine max
Glyma.05G187000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37348576-37358575 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296858 5265 Fabidae View MSA
124068608 5270 Rosid View MSA
123744979 5271 Pentapetalae View MSA
122786536 5272 Eudicot View MSA
122047022 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121344314 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.88871 0.0 18.6545    
cufflinks 6.5444 0.0 17.8086    
cufflinks 5.77397 0.0 15.8187    
cufflinks 4.99082 0.0 13.8351    
cufflinks 5.35863 0.0 14.7448    
cufflinks 2.23739 0.0 6.83704   Low
cufflinks 5.99564 0.0 16.3939    
cufflinks 5.87471 0.0 16.089    
cufflinks 4.18311 0.0 11.8102    
cufflinks 1.479       Low
cufflinks 1.178       Low
cufflinks 2.702       High
cufflinks 2.274        
cufflinks 2.492        
cufflinks 1.707        
cufflinks 2.236        
cufflinks 1.974        
cufflinks 2.417        
cufflinks 3.136       High
cufflinks 1.651        
cufflinks 1.767        
cufflinks 2.053        
cufflinks 2.666       High
cufflinks 1.902        
cufflinks 1.948        
cufflinks 2.429        

0 Strain