Gene : Glyma.05G185800 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG3172 - Small nuclear ribonucleoprotein Sm D3 Genomic Order:  1858
Name:  ? Glyma.05G185800 Secondary Identifier:  ? PAC:30525562
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G185800 0.5kb upstream 0.5kb upstream 2537 true Chr05: 37263576-37266112 Glycine max
Glyma.05G185800 0.5kb upstream 0.5kb upstream 500 false Chr05: 37265613-37266112 Glycine max
Glyma.05G185800 0.5kb downstream 0.5kb downstream 2537 true Chr05: 37263076-37265612 Glycine max
Glyma.05G185800 0.5kb downstream 0.5kb downstream 500 false Chr05: 37263076-37263575 Glycine max
Glyma.05G185800 1.0kb upstream 1.0kb upstream 3037 true Chr05: 37263576-37266612 Glycine max
Glyma.05G185800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37265613-37266612 Glycine max
Glyma.05G185800 1.0kb downstream 1.0kb downstream 3037 true Chr05: 37262576-37265612 Glycine max
Glyma.05G185800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37262576-37263575 Glycine max
Glyma.05G185800 2.0kb upstream 2.0kb upstream 4037 true Chr05: 37263576-37267612 Glycine max
Glyma.05G185800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37265613-37267612 Glycine max
Glyma.05G185800 2.0kb downstream 2.0kb downstream 4037 true Chr05: 37261576-37265612 Glycine max
Glyma.05G185800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37261576-37263575 Glycine max
Glyma.05G185800 5.0kb upstream 5.0kb upstream 7037 true Chr05: 37263576-37270612 Glycine max
Glyma.05G185800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37265613-37270612 Glycine max
Glyma.05G185800 5.0kb downstream 5.0kb downstream 7037 true Chr05: 37258576-37265612 Glycine max
Glyma.05G185800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37258576-37263575 Glycine max
Glyma.05G185800 10.0kb upstream 10.0kb upstream 12037 true Chr05: 37263576-37275612 Glycine max
Glyma.05G185800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37265613-37275612 Glycine max
Glyma.05G185800 10.0kb downstream 10.0kb downstream 12037 true Chr05: 37253576-37265612 Glycine max
Glyma.05G185800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37253576-37263575 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309842 5265 Fabidae View MSA
124071262 5270 Rosid View MSA
123746571 5271 Pentapetalae View MSA
122793733 5272 Eudicot View MSA
122047121 5273 Angiosperm View MSA
121348903 5274 Embryophyte View MSA
123424585 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.2411 0.0 105.211 High Low
cufflinks 50.0688 0.0 180.432 High  
cufflinks 26.8833 0.0 81.3162 High Low
cufflinks 35.0038 0.0 104.784 High  
cufflinks 54.7141 0.0 201.082 High High
cufflinks 56.2838 0.0 170.448 High High
cufflinks 44.3104 0.0 160.521 High  
cufflinks 36.681 0.0 109.056 High  
cufflinks 43.0633 0.0 127.682 High  
cufflinks 5.335        
cufflinks 1.52       Low
cufflinks 5.691        
cufflinks 12.926     High High
cufflinks 16.059     High High
cufflinks 1.647       Low
cufflinks 5.069        
cufflinks 3.186        
cufflinks 6.736        
cufflinks 8.146     High  
cufflinks 3.62        
cufflinks 2.705        
cufflinks 4.517        
cufflinks 7.013        
cufflinks 2.577        
cufflinks 4.372        
cufflinks 3.929        

0 Strain