Gene : Glyma.05G181800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR20426:SF0 - RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG Genomic Order:  1818
Name:  ? Glyma.05G181800 Secondary Identifier:  ? PAC:30526597
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G181800 0.5kb upstream 0.5kb upstream 6185 true Chr05: 36977321-36983505 Glycine max
Glyma.05G181800 0.5kb upstream 0.5kb upstream 500 false Chr05: 36977321-36977820 Glycine max
Glyma.05G181800 0.5kb downstream 0.5kb downstream 6185 true Chr05: 36977821-36984005 Glycine max
Glyma.05G181800 0.5kb downstream 0.5kb downstream 500 false Chr05: 36983506-36984005 Glycine max
Glyma.05G181800 1.0kb upstream 1.0kb upstream 6685 true Chr05: 36976821-36983505 Glycine max
Glyma.05G181800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36976821-36977820 Glycine max
Glyma.05G181800 1.0kb downstream 1.0kb downstream 6685 true Chr05: 36977821-36984505 Glycine max
Glyma.05G181800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36983506-36984505 Glycine max
Glyma.05G181800 2.0kb upstream 2.0kb upstream 7685 true Chr05: 36975821-36983505 Glycine max
Glyma.05G181800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36975821-36977820 Glycine max
Glyma.05G181800 2.0kb downstream 2.0kb downstream 7685 true Chr05: 36977821-36985505 Glycine max
Glyma.05G181800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36983506-36985505 Glycine max
Glyma.05G181800 5.0kb upstream 5.0kb upstream 10685 true Chr05: 36972821-36983505 Glycine max
Glyma.05G181800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36972821-36977820 Glycine max
Glyma.05G181800 5.0kb downstream 5.0kb downstream 10685 true Chr05: 36977821-36988505 Glycine max
Glyma.05G181800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36983506-36988505 Glycine max
Glyma.05G181800 10.0kb upstream 10.0kb upstream 15685 true Chr05: 36967821-36983505 Glycine max
Glyma.05G181800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36967821-36977820 Glycine max
Glyma.05G181800 10.0kb downstream 10.0kb downstream 15685 true Chr05: 36977821-36993505 Glycine max
Glyma.05G181800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36983506-36993505 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308967 5265 Fabidae View MSA
124061173 5270 Rosid View MSA
123737930 5271 Pentapetalae View MSA
122791204 5272 Eudicot View MSA
122042586 5273 Angiosperm View MSA
121343927 5274 Embryophyte View MSA
123426113 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.79626 0.0 21.9687    
cufflinks 5.72041 0.0 21.7681    
cufflinks 3.60264 0.0 15.8098   Low
cufflinks 5.60493 0.0 21.3756    
cufflinks 6.15214 0.0 22.8371    
cufflinks 4.49602 0.0 18.3736    
cufflinks 4.19578 0.0 17.5897    
cufflinks 7.35852 0.0 26.013   High
cufflinks 3.3701 0.0 15.1205   Low
cufflinks 0.615        
cufflinks 0.235       Low
cufflinks 0.453        
cufflinks 0.878       High
cufflinks 1.029       High
cufflinks 0.274       Low
cufflinks 0.443        
cufflinks 0.442        
cufflinks 0.463        
cufflinks 0.715       High
cufflinks 0.403        
cufflinks 0.363        
cufflinks 0.402        
cufflinks 0.517        
cufflinks 0.322        
cufflinks 0.395        
cufflinks 0.461        

0 Strain