Gene : Glyma.05G200100 G. max Wm82.a2.v1
Defline:  (1 of 354) PF00847 - AP2 domain (AP2) Genomic Order:  2001
Name:  ? Glyma.05G200100 Secondary Identifier:  ? PAC:30526789
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G200100 0.5kb upstream 0.5kb upstream 1006 true Chr05: 38383021-38384026 Glycine max
Glyma.05G200100 0.5kb upstream 0.5kb upstream 500 false Chr05: 38383527-38384026 Glycine max
Glyma.05G200100 0.5kb downstream 0.5kb downstream 1006 true Chr05: 38382521-38383526 Glycine max
Glyma.05G200100 0.5kb downstream 0.5kb downstream 500 false Chr05: 38382521-38383020 Glycine max
Glyma.05G200100 1.0kb upstream 1.0kb upstream 1506 true Chr05: 38383021-38384526 Glycine max
Glyma.05G200100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38383527-38384526 Glycine max
Glyma.05G200100 1.0kb downstream 1.0kb downstream 1506 true Chr05: 38382021-38383526 Glycine max
Glyma.05G200100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38382021-38383020 Glycine max
Glyma.05G200100 2.0kb upstream 2.0kb upstream 2506 true Chr05: 38383021-38385526 Glycine max
Glyma.05G200100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38383527-38385526 Glycine max
Glyma.05G200100 2.0kb downstream 2.0kb downstream 2506 true Chr05: 38381021-38383526 Glycine max
Glyma.05G200100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38381021-38383020 Glycine max
Glyma.05G200100 5.0kb upstream 5.0kb upstream 5506 true Chr05: 38383021-38388526 Glycine max
Glyma.05G200100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38383527-38388526 Glycine max
Glyma.05G200100 5.0kb downstream 5.0kb downstream 5506 true Chr05: 38378021-38383526 Glycine max
Glyma.05G200100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38378021-38383020 Glycine max
Glyma.05G200100 10.0kb upstream 10.0kb upstream 10506 true Chr05: 38383021-38393526 Glycine max
Glyma.05G200100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38383527-38393526 Glycine max
Glyma.05G200100 10.0kb downstream 10.0kb downstream 10506 true Chr05: 38373021-38383526 Glycine max
Glyma.05G200100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38373021-38383020 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316588 5265 Fabidae View MSA
124041325 5270 Rosid View MSA
123752918 5271 Pentapetalae View MSA
122793909 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.12511 0.0 11.6208   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.32561 0.0 5.11476    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.201736 0.0 0.844236 Low Low
cufflinks 0.467592 0.0 1.87712    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.031     Low Low
cufflinks 0.422        
cufflinks 0.178        
cufflinks 0.316        
cufflinks 0.264        
cufflinks 0.041     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.092        
cufflinks 0.062     Low  
cufflinks 0.029     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.526       High
cufflinks 0.031     Low Low
cufflinks 0.135        
cufflinks 1.531       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.294        

0 Strain