Gene : Glyma.05G238700 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR16023 - TAX1 BINDING PROTEIN-RELATED Genomic Order:  2387
Name:  ? Glyma.05G238700 Secondary Identifier:  ? PAC:30524930
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G238700 0.5kb upstream 0.5kb upstream 9417 true Chr05: 41456121-41465537 Glycine max
Glyma.05G238700 0.5kb upstream 0.5kb upstream 500 false Chr05: 41465038-41465537 Glycine max
Glyma.05G238700 0.5kb downstream 0.5kb downstream 9417 true Chr05: 41455621-41465037 Glycine max
Glyma.05G238700 0.5kb downstream 0.5kb downstream 500 false Chr05: 41455621-41456120 Glycine max
Glyma.05G238700 1.0kb upstream 1.0kb upstream 9917 true Chr05: 41456121-41466037 Glycine max
Glyma.05G238700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 41465038-41466037 Glycine max
Glyma.05G238700 1.0kb downstream 1.0kb downstream 9917 true Chr05: 41455121-41465037 Glycine max
Glyma.05G238700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 41455121-41456120 Glycine max
Glyma.05G238700 2.0kb upstream 2.0kb upstream 10917 true Chr05: 41456121-41467037 Glycine max
Glyma.05G238700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 41465038-41467037 Glycine max
Glyma.05G238700 2.0kb downstream 2.0kb downstream 10917 true Chr05: 41454121-41465037 Glycine max
Glyma.05G238700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 41454121-41456120 Glycine max
Glyma.05G238700 5.0kb upstream 5.0kb upstream 13917 true Chr05: 41456121-41470037 Glycine max
Glyma.05G238700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 41465038-41470037 Glycine max
Glyma.05G238700 5.0kb downstream 5.0kb downstream 13917 true Chr05: 41451121-41465037 Glycine max
Glyma.05G238700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 41451121-41456120 Glycine max
Glyma.05G238700 10.0kb upstream 10.0kb upstream 18917 true Chr05: 41456121-41475037 Glycine max
Glyma.05G238700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 41465038-41475037 Glycine max
Glyma.05G238700 10.0kb downstream 10.0kb downstream 18917 true Chr05: 41446121-41465037 Glycine max
Glyma.05G238700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 41446121-41456120 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311338 5265 Fabidae View MSA
124065694 5270 Rosid View MSA
123742158 5271 Pentapetalae View MSA
122787400 5272 Eudicot View MSA
122047421 5273 Angiosperm View MSA
121346915 5274 Embryophyte View MSA
123428205 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.6994 0.0 57.4985    
cufflinks 9.49455 0.0 32.0324    
cufflinks 28.7536 0.0 109.2 High High
cufflinks 12.2593 0.0 41.2801    
cufflinks 12.481 0.0 42.0766    
cufflinks 18.2994 0.0 63.5586    
cufflinks 7.7223 0.0 26.4749   Low
cufflinks 15.1375 0.0 51.5693    
cufflinks 12.0696 0.0 40.7271    
cufflinks 2.249        
cufflinks 3.731       High
cufflinks 3.369       High
cufflinks 2.388        
cufflinks 2.117        
cufflinks 2.473        
cufflinks 2.074        
cufflinks 2.126        
cufflinks 2.793        
cufflinks 2.023        
cufflinks 2.467        
cufflinks 2.812        
cufflinks 2.421        
cufflinks 1.954       Low
cufflinks 3.702       High
cufflinks 2.155        
cufflinks 2.219        

0 Strain