Gene : Glyma.05G232800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12121:SF41 - CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3 Genomic Order:  2328
Name:  ? Glyma.05G232800 Secondary Identifier:  ? PAC:30526337
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G232800 0.5kb upstream 0.5kb upstream 7821 true Chr05: 41022747-41030567 Glycine max
Glyma.05G232800 0.5kb upstream 0.5kb upstream 500 false Chr05: 41030068-41030567 Glycine max
Glyma.05G232800 0.5kb downstream 0.5kb downstream 7821 true Chr05: 41022247-41030067 Glycine max
Glyma.05G232800 0.5kb downstream 0.5kb downstream 500 false Chr05: 41022247-41022746 Glycine max
Glyma.05G232800 1.0kb upstream 1.0kb upstream 8321 true Chr05: 41022747-41031067 Glycine max
Glyma.05G232800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 41030068-41031067 Glycine max
Glyma.05G232800 1.0kb downstream 1.0kb downstream 8321 true Chr05: 41021747-41030067 Glycine max
Glyma.05G232800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 41021747-41022746 Glycine max
Glyma.05G232800 2.0kb upstream 2.0kb upstream 9321 true Chr05: 41022747-41032067 Glycine max
Glyma.05G232800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 41030068-41032067 Glycine max
Glyma.05G232800 2.0kb downstream 2.0kb downstream 9321 true Chr05: 41020747-41030067 Glycine max
Glyma.05G232800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 41020747-41022746 Glycine max
Glyma.05G232800 5.0kb upstream 5.0kb upstream 12321 true Chr05: 41022747-41035067 Glycine max
Glyma.05G232800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 41030068-41035067 Glycine max
Glyma.05G232800 5.0kb downstream 5.0kb downstream 12321 true Chr05: 41017747-41030067 Glycine max
Glyma.05G232800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 41017747-41022746 Glycine max
Glyma.05G232800 10.0kb upstream 10.0kb upstream 17321 true Chr05: 41022747-41040067 Glycine max
Glyma.05G232800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 41030068-41040067 Glycine max
Glyma.05G232800 10.0kb downstream 10.0kb downstream 17321 true Chr05: 41012747-41030067 Glycine max
Glyma.05G232800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 41012747-41022746 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308895 5265 Fabidae View MSA
124063317 5270 Rosid View MSA
123750146 5271 Pentapetalae View MSA
122793805 5272 Eudicot View MSA
122047277 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.72757 0.0 30.3234   High
cufflinks 1.44574 0.0 9.273    
cufflinks 1.36551 0.0 7.92402    
cufflinks 0.802292 0.0 5.02711    
cufflinks 0.514677 0.0 2.56247    
cufflinks 0.402447 0.0 2.00597    
cufflinks 0.281329 0.0 1.37274   Low
cufflinks 0.862823 0.0 3.86625    
cufflinks 0.572894 0.0 3.569    
cufflinks 0.06     Low  
cufflinks 0.078        
cufflinks 0.126        
cufflinks 0.028     Low Low
cufflinks 0.026     Low Low
cufflinks 0.095        
cufflinks 0.651       High
cufflinks 0.047     Low  
cufflinks 0.162        
cufflinks 0.16        
cufflinks 0.694       High
cufflinks 0.071        
cufflinks 0.647       High
cufflinks 0.589       High
cufflinks 0.101        
cufflinks 0.697       High
cufflinks 0.051     Low  

0 Strain