Gene : Glyma.05G223400 G. max Wm82.a2.v1
Defline:  (1 of 11) 2.1.1.104 - Caffeoyl-CoA O-methyltransferase / Trans-caffeoyl-CoA 3-O-methyltransferase Genomic Order:  2234
Name:  ? Glyma.05G223400 Secondary Identifier:  ? PAC:30526664
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1121 Glycine max pathologic  
Gmax PWY-361 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G223400 0.5kb upstream 0.5kb upstream 2181 true Chr05: 40272812-40274992 Glycine max
Glyma.05G223400 0.5kb upstream 0.5kb upstream 500 false Chr05: 40272812-40273311 Glycine max
Glyma.05G223400 0.5kb downstream 0.5kb downstream 2181 true Chr05: 40273312-40275492 Glycine max
Glyma.05G223400 0.5kb downstream 0.5kb downstream 500 false Chr05: 40274993-40275492 Glycine max
Glyma.05G223400 1.0kb upstream 1.0kb upstream 2681 true Chr05: 40272312-40274992 Glycine max
Glyma.05G223400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40272312-40273311 Glycine max
Glyma.05G223400 1.0kb downstream 1.0kb downstream 2681 true Chr05: 40273312-40275992 Glycine max
Glyma.05G223400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40274993-40275992 Glycine max
Glyma.05G223400 2.0kb upstream 2.0kb upstream 3681 true Chr05: 40271312-40274992 Glycine max
Glyma.05G223400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40271312-40273311 Glycine max
Glyma.05G223400 2.0kb downstream 2.0kb downstream 3681 true Chr05: 40273312-40276992 Glycine max
Glyma.05G223400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40274993-40276992 Glycine max
Glyma.05G223400 5.0kb upstream 5.0kb upstream 6681 true Chr05: 40268312-40274992 Glycine max
Glyma.05G223400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40268312-40273311 Glycine max
Glyma.05G223400 5.0kb downstream 5.0kb downstream 6681 true Chr05: 40273312-40279992 Glycine max
Glyma.05G223400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40274993-40279992 Glycine max
Glyma.05G223400 10.0kb upstream 10.0kb upstream 11681 true Chr05: 40263312-40274992 Glycine max
Glyma.05G223400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40263312-40273311 Glycine max
Glyma.05G223400 10.0kb downstream 10.0kb downstream 11681 true Chr05: 40273312-40284992 Glycine max
Glyma.05G223400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40274993-40284992 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314949 5265 Fabidae View MSA
124070229 5270 Rosid View MSA
123751667 5271 Pentapetalae View MSA
122774127 5272 Eudicot View MSA
122050348 5273 Angiosperm View MSA
121311864 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0272247 0.0 0.137406 Low Low
cufflinks 4.03089 0.0 21.746    
cufflinks 7.26225 0.0 35.0547    
cufflinks 6.00587 0.0 27.9242    
cufflinks 2.0173 0.0 13.365    
cufflinks 12.2035 0.0 49.326    
cufflinks 27.6087 0.0 106.327 High High
cufflinks 4.53912 0.0 15.2584    
cufflinks 1.26394 0.0 8.52259    
cufflinks 22.516     High High
cufflinks 0.028     Low Low
cufflinks 9.619     High High
cufflinks 0.115        
cufflinks 0.027     Low Low
cufflinks 0.016     Low Low
cufflinks 3.364        
cufflinks 0.051     Low  
cufflinks 73.854     High High
cufflinks 0.597        
cufflinks 1.433        
cufflinks 0.058     Low  
cufflinks 0.972        
cufflinks 2.565        
cufflinks 0.039     Low  
cufflinks 1.343        
cufflinks 0.039     Low  

0 Strain