Gene : Glyma.05G248900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22778:SF18 - RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 8, CHLOROPLASTIC Genomic Order:  2489
Name:  ? Glyma.05G248900 Secondary Identifier:  ? PAC:30524014
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G248900 0.5kb upstream 0.5kb upstream 11891 true Chr05: 42203372-42215262 Glycine max
Glyma.05G248900 0.5kb upstream 0.5kb upstream 500 false Chr05: 42214763-42215262 Glycine max
Glyma.05G248900 0.5kb downstream 0.5kb downstream 11891 true Chr05: 42202872-42214762 Glycine max
Glyma.05G248900 0.5kb downstream 0.5kb downstream 500 false Chr05: 42202872-42203371 Glycine max
Glyma.05G248900 1.0kb upstream 1.0kb upstream 12391 true Chr05: 42203372-42215762 Glycine max
Glyma.05G248900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 42214763-42215762 Glycine max
Glyma.05G248900 1.0kb downstream 1.0kb downstream 12391 true Chr05: 42202372-42214762 Glycine max
Glyma.05G248900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 42202372-42203371 Glycine max
Glyma.05G248900 2.0kb upstream 2.0kb upstream 13391 true Chr05: 42203372-42216762 Glycine max
Glyma.05G248900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 42214763-42216762 Glycine max
Glyma.05G248900 2.0kb downstream 2.0kb downstream 13391 true Chr05: 42201372-42214762 Glycine max
Glyma.05G248900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 42201372-42203371 Glycine max
Glyma.05G248900 5.0kb upstream 5.0kb upstream 16391 true Chr05: 42203372-42219762 Glycine max
Glyma.05G248900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 42214763-42219762 Glycine max
Glyma.05G248900 5.0kb downstream 5.0kb downstream 16391 true Chr05: 42198372-42214762 Glycine max
Glyma.05G248900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 42198372-42203371 Glycine max
Glyma.05G248900 10.0kb upstream 10.0kb upstream 21391 true Chr05: 42203372-42224762 Glycine max
Glyma.05G248900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 42214763-42224762 Glycine max
Glyma.05G248900 10.0kb downstream 10.0kb downstream 21391 true Chr05: 42193372-42214762 Glycine max
Glyma.05G248900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 42193372-42203371 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309804 5265 Fabidae View MSA
124065740 5270 Rosid View MSA
123736994 5271 Pentapetalae View MSA
122787979 5272 Eudicot View MSA
122046672 5273 Angiosperm View MSA
121346147 5274 Embryophyte View MSA
123427771 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.6036 0.0 53.8283   High
cufflinks 3.01274 0.0 19.0425    
cufflinks 2.97025 0.0 15.0482    
cufflinks 2.48847 0.0 14.2293    
cufflinks 1.91708 0.0 11.6152    
cufflinks 1.18794 0.0 5.06204   Low
cufflinks 7.29516 0.0 34.4162   High
cufflinks 1.73051 0.0 10.816    
cufflinks 2.32381 0.0 14.9075    
cufflinks 0.049     Low  
cufflinks 0.044     Low  
cufflinks 0.111     Low  
cufflinks 0.029     Low Low
cufflinks 0.045     Low  
cufflinks 0.062        
cufflinks 0.463       High
cufflinks 0.04     Low  
cufflinks 0.135        
cufflinks 0.077     Low  
cufflinks 0.589       High
cufflinks 0.031     Low Low
cufflinks 0.462       High
cufflinks 0.447       High
cufflinks 0.035     Low  
cufflinks 0.56       High
cufflinks 0.032     Low  

0 Strain