Gene : Glyma.06G001800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11229:SF5 - 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC Genomic Order:  18
Name:  ? Glyma.06G001800 Secondary Identifier:  ? PAC:30553683
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G001800 0.5kb upstream 0.5kb upstream 1746 true Chr06: 171121-172866 Glycine max
Glyma.06G001800 0.5kb upstream 0.5kb upstream 500 false Chr06: 172367-172866 Glycine max
Glyma.06G001800 0.5kb downstream 0.5kb downstream 1746 true Chr06: 170621-172366 Glycine max
Glyma.06G001800 0.5kb downstream 0.5kb downstream 500 false Chr06: 170621-171120 Glycine max
Glyma.06G001800 1.0kb upstream 1.0kb upstream 2246 true Chr06: 171121-173366 Glycine max
Glyma.06G001800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 172367-173366 Glycine max
Glyma.06G001800 1.0kb downstream 1.0kb downstream 2246 true Chr06: 170121-172366 Glycine max
Glyma.06G001800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 170121-171120 Glycine max
Glyma.06G001800 2.0kb upstream 2.0kb upstream 3246 true Chr06: 171121-174366 Glycine max
Glyma.06G001800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 172367-174366 Glycine max
Glyma.06G001800 2.0kb downstream 2.0kb downstream 3246 true Chr06: 169121-172366 Glycine max
Glyma.06G001800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 169121-171120 Glycine max
Glyma.06G001800 5.0kb upstream 5.0kb upstream 6246 true Chr06: 171121-177366 Glycine max
Glyma.06G001800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 172367-177366 Glycine max
Glyma.06G001800 5.0kb downstream 5.0kb downstream 6246 true Chr06: 166121-172366 Glycine max
Glyma.06G001800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 166121-171120 Glycine max
Glyma.06G001800 10.0kb upstream 10.0kb upstream 11246 true Chr06: 171121-182366 Glycine max
Glyma.06G001800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 172367-182366 Glycine max
Glyma.06G001800 10.0kb downstream 10.0kb downstream 11246 true Chr06: 161121-172366 Glycine max
Glyma.06G001800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 161121-171120 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307169 5265 Fabidae View MSA
124065748 5270 Rosid View MSA
123738744 5271 Pentapetalae View MSA
122789869 5272 Eudicot View MSA
122045324 5273 Angiosperm View MSA
121345388 5274 Embryophyte View MSA
123425117 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.5678 0.0 103.169 High High
cufflinks 30.9431 0.0 82.5523 High High
cufflinks 6.92839 0.0 20.6254   Low
cufflinks 15.635 0.0 42.6753    
cufflinks 17.3061 0.0 46.8742    
cufflinks 16.6723 0.0 45.3126    
cufflinks 22.175 0.0 59.4471 High  
cufflinks 17.0265 0.0 46.1784    
cufflinks 12.7822 0.0 35.4007    
cufflinks 23.414     High  
cufflinks 2.742       Low
cufflinks 12.687     High  
cufflinks 16.084     High  
cufflinks 19.781     High  
cufflinks 4.507       Low
cufflinks 81.168     High High
cufflinks 4.734       Low
cufflinks 15.905     High  
cufflinks 30.17     High  
cufflinks 85.724     High High
cufflinks 4.247       Low
cufflinks 76.818     High High
cufflinks 79.377     High High
cufflinks 5.508        
cufflinks 79.636     High High
cufflinks 5.462        

0 Strain