Gene : Glyma.06G084800 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Genomic Order:  848
Name:  ? Glyma.06G084800 Secondary Identifier:  ? PAC:30549235
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G084800 0.5kb upstream 0.5kb upstream 2410 true Chr06: 6515571-6517980 Glycine max
Glyma.06G084800 0.5kb upstream 0.5kb upstream 500 false Chr06: 6517481-6517980 Glycine max
Glyma.06G084800 0.5kb downstream 0.5kb downstream 2410 true Chr06: 6515071-6517480 Glycine max
Glyma.06G084800 0.5kb downstream 0.5kb downstream 500 false Chr06: 6515071-6515570 Glycine max
Glyma.06G084800 1.0kb upstream 1.0kb upstream 2910 true Chr06: 6515571-6518480 Glycine max
Glyma.06G084800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 6517481-6518480 Glycine max
Glyma.06G084800 1.0kb downstream 1.0kb downstream 2910 true Chr06: 6514571-6517480 Glycine max
Glyma.06G084800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 6514571-6515570 Glycine max
Glyma.06G084800 2.0kb upstream 2.0kb upstream 3910 true Chr06: 6515571-6519480 Glycine max
Glyma.06G084800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 6517481-6519480 Glycine max
Glyma.06G084800 2.0kb downstream 2.0kb downstream 3910 true Chr06: 6513571-6517480 Glycine max
Glyma.06G084800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 6513571-6515570 Glycine max
Glyma.06G084800 5.0kb upstream 5.0kb upstream 6910 true Chr06: 6515571-6522480 Glycine max
Glyma.06G084800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 6517481-6522480 Glycine max
Glyma.06G084800 5.0kb downstream 5.0kb downstream 6910 true Chr06: 6510571-6517480 Glycine max
Glyma.06G084800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 6510571-6515570 Glycine max
Glyma.06G084800 10.0kb upstream 10.0kb upstream 11910 true Chr06: 6515571-6527480 Glycine max
Glyma.06G084800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 6517481-6527480 Glycine max
Glyma.06G084800 10.0kb downstream 10.0kb downstream 11910 true Chr06: 6505571-6517480 Glycine max
Glyma.06G084800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 6505571-6515570 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297459 5265 Fabidae View MSA
124068292 5270 Rosid View MSA
123750856 5271 Pentapetalae View MSA
122796096 5272 Eudicot View MSA
122047388 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121346576 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.11981 0.0 3.92433    
cufflinks 1.02391 0.0 3.61346    
cufflinks 4.50931 0.0 13.1831   High
cufflinks 1.11678 0.0 3.90639    
cufflinks 1.71853 0.0 5.75741    
cufflinks 1.66793 0.0 5.61193    
cufflinks 1.7076 0.0 5.73797    
cufflinks 1.50193 0.0 5.09898    
cufflinks 5.47726 0.0 15.6578   High
cufflinks 0.163        
cufflinks 0.447        
cufflinks 0.35        
cufflinks 1.66       High
cufflinks 0.556        
cufflinks 0.073       Low
cufflinks 0.27        
cufflinks 0.336        
cufflinks 0.197        
cufflinks 0.135       Low
cufflinks 0.518        
cufflinks 0.546        
cufflinks 0.408        
cufflinks 0.243        
cufflinks 2.111       High
cufflinks 0.324        
cufflinks 0.099       Low

0 Strain