Gene : Glyma.06G111400 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR22811//PTHR22811:SF68 - TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN Genomic Order:  1114
Name:  ? Glyma.06G111400 Secondary Identifier:  ? PAC:30551138
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G111400 0.5kb upstream 0.5kb upstream 2511 true Chr06: 9017568-9020078 Glycine max
Glyma.06G111400 0.5kb upstream 0.5kb upstream 500 false Chr06: 9017568-9018067 Glycine max
Glyma.06G111400 0.5kb downstream 0.5kb downstream 2511 true Chr06: 9018068-9020578 Glycine max
Glyma.06G111400 0.5kb downstream 0.5kb downstream 500 false Chr06: 9020079-9020578 Glycine max
Glyma.06G111400 1.0kb upstream 1.0kb upstream 3011 true Chr06: 9017068-9020078 Glycine max
Glyma.06G111400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9017068-9018067 Glycine max
Glyma.06G111400 1.0kb downstream 1.0kb downstream 3011 true Chr06: 9018068-9021078 Glycine max
Glyma.06G111400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9020079-9021078 Glycine max
Glyma.06G111400 2.0kb upstream 2.0kb upstream 4011 true Chr06: 9016068-9020078 Glycine max
Glyma.06G111400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9016068-9018067 Glycine max
Glyma.06G111400 2.0kb downstream 2.0kb downstream 4011 true Chr06: 9018068-9022078 Glycine max
Glyma.06G111400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9020079-9022078 Glycine max
Glyma.06G111400 5.0kb upstream 5.0kb upstream 7011 true Chr06: 9013068-9020078 Glycine max
Glyma.06G111400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9013068-9018067 Glycine max
Glyma.06G111400 5.0kb downstream 5.0kb downstream 7011 true Chr06: 9018068-9025078 Glycine max
Glyma.06G111400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9020079-9025078 Glycine max
Glyma.06G111400 10.0kb upstream 10.0kb upstream 12011 true Chr06: 9008068-9020078 Glycine max
Glyma.06G111400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9008068-9018067 Glycine max
Glyma.06G111400 10.0kb downstream 10.0kb downstream 12011 true Chr06: 9018068-9030078 Glycine max
Glyma.06G111400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9020079-9030078 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297897 5265 Fabidae View MSA
124065325 5270 Rosid View MSA
123743210 5271 Pentapetalae View MSA
122786619 5272 Eudicot View MSA
122045643 5273 Angiosperm View MSA
121349336 5274 Embryophyte View MSA
123428181 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.4667 0.0 46.9493    
cufflinks 6.18371 0.0 18.2131   Low
cufflinks 11.4616 0.0 31.4659    
cufflinks 14.2243 0.0 38.567    
cufflinks 14.6348 0.0 39.6824    
cufflinks 38.6679 0.0 104.077 High High
cufflinks 14.7621 0.0 40.0009    
cufflinks 17.602 0.0 47.2532    
cufflinks 13.1955 0.0 35.9604    
cufflinks 11.062     High  
cufflinks 28.673     High High
cufflinks 8.356     High  
cufflinks 16.014     High  
cufflinks 18.788     High  
cufflinks 14.981     High  
cufflinks 12.895     High  
cufflinks 22.358     High  
cufflinks 6.696       Low
cufflinks 5.356       Low
cufflinks 11.914     High  
cufflinks 31.698     High High
cufflinks 10.75     High  
cufflinks 8.153     High  
cufflinks 24.425     High High
cufflinks 10.038     High  
cufflinks 29.948     High High

0 Strain