Gene : Glyma.06G105200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22847//PTHR22847:SF453 - WD40 REPEAT PROTEIN Genomic Order:  1052
Name:  ? Glyma.06G105200 Secondary Identifier:  ? PAC:30551017
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G105200 0.5kb upstream 0.5kb upstream 5740 true Chr06: 8409338-8415077 Glycine max
Glyma.06G105200 0.5kb upstream 0.5kb upstream 500 false Chr06: 8414578-8415077 Glycine max
Glyma.06G105200 0.5kb downstream 0.5kb downstream 5740 true Chr06: 8408838-8414577 Glycine max
Glyma.06G105200 0.5kb downstream 0.5kb downstream 500 false Chr06: 8408838-8409337 Glycine max
Glyma.06G105200 1.0kb upstream 1.0kb upstream 6240 true Chr06: 8409338-8415577 Glycine max
Glyma.06G105200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 8414578-8415577 Glycine max
Glyma.06G105200 1.0kb downstream 1.0kb downstream 6240 true Chr06: 8408338-8414577 Glycine max
Glyma.06G105200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 8408338-8409337 Glycine max
Glyma.06G105200 2.0kb upstream 2.0kb upstream 7240 true Chr06: 8409338-8416577 Glycine max
Glyma.06G105200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 8414578-8416577 Glycine max
Glyma.06G105200 2.0kb downstream 2.0kb downstream 7240 true Chr06: 8407338-8414577 Glycine max
Glyma.06G105200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 8407338-8409337 Glycine max
Glyma.06G105200 5.0kb upstream 5.0kb upstream 10240 true Chr06: 8409338-8419577 Glycine max
Glyma.06G105200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 8414578-8419577 Glycine max
Glyma.06G105200 5.0kb downstream 5.0kb downstream 10240 true Chr06: 8404338-8414577 Glycine max
Glyma.06G105200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 8404338-8409337 Glycine max
Glyma.06G105200 10.0kb upstream 10.0kb upstream 15240 true Chr06: 8409338-8424577 Glycine max
Glyma.06G105200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 8414578-8424577 Glycine max
Glyma.06G105200 10.0kb downstream 10.0kb downstream 15240 true Chr06: 8399338-8414577 Glycine max
Glyma.06G105200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 8399338-8409337 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121610956 5273 Angiosperm Singleton cluster - no MSA
122243877 5265 Fabidae Singleton cluster - no MSA
123988298 5270 Rosid Singleton cluster - no MSA
123563492 5271 Pentapetalae Singleton cluster - no MSA
122598268 5272 Eudicot Singleton cluster - no MSA
120883193 5274 Embryophyte Singleton cluster - no MSA
123428605 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.43967 0.0 17.0651    
cufflinks 2.24077 0.0 12.7592    
cufflinks 7.03699 0.0 33.6153   High
cufflinks 2.92811 0.0 12.8154    
cufflinks 1.78386 0.0 9.39746    
cufflinks 3.58123 0.0 14.356    
cufflinks 4.42929 0.0 22.8875    
cufflinks 1.11012 0.0 4.83425   Low
cufflinks 2.93128 0.0 12.6444    
cufflinks 0.114        
cufflinks 0.157        
cufflinks 0.53       High
cufflinks 0.201        
cufflinks 0.088       Low
cufflinks 0.494       High
cufflinks 0.112        
cufflinks 0.363        
cufflinks 0.646       High
cufflinks 0.333        
cufflinks 0.08     Low Low
cufflinks 0.064       Low
cufflinks 0.121        
cufflinks 0.101     Low  
cufflinks 0.126        
cufflinks 0.162        
cufflinks 0.269        

0 Strain