Gene : Glyma.06G108000 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR21237:SF4 - GRPE PROTEIN HOMOLOG Genomic Order:  1080
Name:  ? Glyma.06G108000 Secondary Identifier:  ? PAC:30550073
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G108000 0.5kb upstream 0.5kb upstream 4181 true Chr06: 8672566-8676746 Glycine max
Glyma.06G108000 0.5kb upstream 0.5kb upstream 500 false Chr06: 8676247-8676746 Glycine max
Glyma.06G108000 0.5kb downstream 0.5kb downstream 4181 true Chr06: 8672066-8676246 Glycine max
Glyma.06G108000 0.5kb downstream 0.5kb downstream 500 false Chr06: 8672066-8672565 Glycine max
Glyma.06G108000 1.0kb upstream 1.0kb upstream 4681 true Chr06: 8672566-8677246 Glycine max
Glyma.06G108000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 8676247-8677246 Glycine max
Glyma.06G108000 1.0kb downstream 1.0kb downstream 4681 true Chr06: 8671566-8676246 Glycine max
Glyma.06G108000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 8671566-8672565 Glycine max
Glyma.06G108000 2.0kb upstream 2.0kb upstream 5681 true Chr06: 8672566-8678246 Glycine max
Glyma.06G108000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 8676247-8678246 Glycine max
Glyma.06G108000 2.0kb downstream 2.0kb downstream 5681 true Chr06: 8670566-8676246 Glycine max
Glyma.06G108000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 8670566-8672565 Glycine max
Glyma.06G108000 5.0kb upstream 5.0kb upstream 8681 true Chr06: 8672566-8681246 Glycine max
Glyma.06G108000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 8676247-8681246 Glycine max
Glyma.06G108000 5.0kb downstream 5.0kb downstream 8681 true Chr06: 8667566-8676246 Glycine max
Glyma.06G108000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 8667566-8672565 Glycine max
Glyma.06G108000 10.0kb upstream 10.0kb upstream 13681 true Chr06: 8672566-8686246 Glycine max
Glyma.06G108000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 8676247-8686246 Glycine max
Glyma.06G108000 10.0kb downstream 10.0kb downstream 13681 true Chr06: 8662566-8676246 Glycine max
Glyma.06G108000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 8662566-8672565 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309592 5265 Fabidae View MSA
124068578 5270 Rosid View MSA
123741631 5271 Pentapetalae View MSA
122792081 5272 Eudicot View MSA
122048667 5273 Angiosperm View MSA
121346760 5274 Embryophyte View MSA
123427154 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6082 0.0 29.1006   High
cufflinks 5.18646 0.0 15.3379    
cufflinks 3.37922 0.0 10.5832    
cufflinks 4.45714 0.0 13.4431    
cufflinks 4.24538 0.0 12.9491    
cufflinks 4.1046 0.0 12.5429    
cufflinks 1.65598 0.0 5.7259   Low
cufflinks 4.22328 0.0 12.8469    
cufflinks 3.49047 0.0 10.917    
cufflinks 1.84        
cufflinks 1.354        
cufflinks 2.511        
cufflinks 2.018        
cufflinks 2.253        
cufflinks 1.0       Low
cufflinks 2.877        
cufflinks 1.433        
cufflinks 2.701        
cufflinks 2.013        
cufflinks 3.46       High
cufflinks 1.078       Low
cufflinks 3.388       High
cufflinks 4.857       High
cufflinks 1.553        
cufflinks 2.821        
cufflinks 1.105       Low

0 Strain