Gene : Glyma.06G093000 G. max Wm82.a2.v1
Defline:  (1 of 16) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  930
Name:  ? Glyma.06G093000 Secondary Identifier:  ? PAC:30550869
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G093000 0.5kb upstream 0.5kb upstream 2394 true Chr06: 7328572-7330965 Glycine max
Glyma.06G093000 0.5kb upstream 0.5kb upstream 500 false Chr06: 7328572-7329071 Glycine max
Glyma.06G093000 0.5kb downstream 0.5kb downstream 2394 true Chr06: 7329072-7331465 Glycine max
Glyma.06G093000 0.5kb downstream 0.5kb downstream 500 false Chr06: 7330966-7331465 Glycine max
Glyma.06G093000 1.0kb upstream 1.0kb upstream 2894 true Chr06: 7328072-7330965 Glycine max
Glyma.06G093000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 7328072-7329071 Glycine max
Glyma.06G093000 1.0kb downstream 1.0kb downstream 2894 true Chr06: 7329072-7331965 Glycine max
Glyma.06G093000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 7330966-7331965 Glycine max
Glyma.06G093000 2.0kb upstream 2.0kb upstream 3894 true Chr06: 7327072-7330965 Glycine max
Glyma.06G093000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 7327072-7329071 Glycine max
Glyma.06G093000 2.0kb downstream 2.0kb downstream 3894 true Chr06: 7329072-7332965 Glycine max
Glyma.06G093000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 7330966-7332965 Glycine max
Glyma.06G093000 5.0kb upstream 5.0kb upstream 6894 true Chr06: 7324072-7330965 Glycine max
Glyma.06G093000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 7324072-7329071 Glycine max
Glyma.06G093000 5.0kb downstream 5.0kb downstream 6894 true Chr06: 7329072-7335965 Glycine max
Glyma.06G093000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 7330966-7335965 Glycine max
Glyma.06G093000 10.0kb upstream 10.0kb upstream 11894 true Chr06: 7319072-7330965 Glycine max
Glyma.06G093000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 7319072-7329071 Glycine max
Glyma.06G093000 10.0kb downstream 10.0kb downstream 11894 true Chr06: 7329072-7340965 Glycine max
Glyma.06G093000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 7330966-7340965 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302450 5265 Fabidae View MSA
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.96289 0.0 21.7881    
cufflinks 7.99884 0.0 21.8711    
cufflinks 5.93472 0.0 16.6286    
cufflinks 5.95159 0.0 16.688    
cufflinks 6.3892 0.0 17.7905    
cufflinks 3.78597 0.0 11.1893   Low
cufflinks 5.66656 0.0 15.9695    
cufflinks 6.4537 0.0 17.9383    
cufflinks 8.54712 0.0 23.2582   High
cufflinks 6.558        
cufflinks 4.078       Low
cufflinks 13.75     High High
cufflinks 6.856        
cufflinks 8.141     High  
cufflinks 9.272     High  
cufflinks 9.995     High  
cufflinks 2.983       Low
cufflinks 20.16     High High
cufflinks 13.774     High High
cufflinks 8.59     High  
cufflinks 4.067       Low
cufflinks 9.96     High  
cufflinks 9.949     High  
cufflinks 4.879        
cufflinks 9.233     High  
cufflinks 3.288       Low

0 Strain