Gene : Glyma.06G125700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1257
Name:  ? Glyma.06G125700 Secondary Identifier:  ? PAC:30550754
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G125700 0.5kb upstream 0.5kb upstream 4077 true Chr06: 10254809-10258885 Glycine max
Glyma.06G125700 0.5kb upstream 0.5kb upstream 500 false Chr06: 10254809-10255308 Glycine max
Glyma.06G125700 0.5kb downstream 0.5kb downstream 4077 true Chr06: 10255309-10259385 Glycine max
Glyma.06G125700 0.5kb downstream 0.5kb downstream 500 false Chr06: 10258886-10259385 Glycine max
Glyma.06G125700 1.0kb upstream 1.0kb upstream 4577 true Chr06: 10254309-10258885 Glycine max
Glyma.06G125700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 10254309-10255308 Glycine max
Glyma.06G125700 1.0kb downstream 1.0kb downstream 4577 true Chr06: 10255309-10259885 Glycine max
Glyma.06G125700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 10258886-10259885 Glycine max
Glyma.06G125700 2.0kb upstream 2.0kb upstream 5577 true Chr06: 10253309-10258885 Glycine max
Glyma.06G125700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 10253309-10255308 Glycine max
Glyma.06G125700 2.0kb downstream 2.0kb downstream 5577 true Chr06: 10255309-10260885 Glycine max
Glyma.06G125700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 10258886-10260885 Glycine max
Glyma.06G125700 5.0kb upstream 5.0kb upstream 8577 true Chr06: 10250309-10258885 Glycine max
Glyma.06G125700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 10250309-10255308 Glycine max
Glyma.06G125700 5.0kb downstream 5.0kb downstream 8577 true Chr06: 10255309-10263885 Glycine max
Glyma.06G125700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 10258886-10263885 Glycine max
Glyma.06G125700 10.0kb upstream 10.0kb upstream 13577 true Chr06: 10245309-10258885 Glycine max
Glyma.06G125700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 10245309-10255308 Glycine max
Glyma.06G125700 10.0kb downstream 10.0kb downstream 13577 true Chr06: 10255309-10268885 Glycine max
Glyma.06G125700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 10258886-10268885 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
122311905 5265 Fabidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 108.926 0.0 631.289 High High
cufflinks 6.90441 0.0 28.8962    
cufflinks 36.4877 0.0 148.838 High High
cufflinks 12.6743 0.0 53.1633    
cufflinks 0.324753 0.0 2.50408   Low
cufflinks 0.766029 0.0 3.34197    
cufflinks 2.24352 0.0 9.9597    
cufflinks 6.94884 0.0 29.8171    
cufflinks 0.575187 0.0 3.44049   Low
cufflinks 1.222        
cufflinks 0.317        
cufflinks 6.372       High
cufflinks 0.356        
cufflinks 0.024     Low Low
cufflinks 0.018     Low Low
cufflinks 4.84       High
cufflinks 0.049     Low Low
cufflinks 1.674        
cufflinks 2.73        
cufflinks 2.429        
cufflinks 0.173        
cufflinks 3.95        
cufflinks 2.521        
cufflinks 0.327        
cufflinks 5.666       High
cufflinks 0.13        

0 Strain