Gene : Glyma.06G116900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR30612:SF5 - PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC Genomic Order:  1169
Name:  ? Glyma.06G116900 Secondary Identifier:  ? PAC:30550036
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G116900 0.5kb upstream 0.5kb upstream 16464 true Chr06: 9502192-9518655 Glycine max
Glyma.06G116900 0.5kb upstream 0.5kb upstream 500 false Chr06: 9502192-9502691 Glycine max
Glyma.06G116900 0.5kb downstream 0.5kb downstream 16464 true Chr06: 9502692-9519155 Glycine max
Glyma.06G116900 0.5kb downstream 0.5kb downstream 500 false Chr06: 9518656-9519155 Glycine max
Glyma.06G116900 1.0kb upstream 1.0kb upstream 16964 true Chr06: 9501692-9518655 Glycine max
Glyma.06G116900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9501692-9502691 Glycine max
Glyma.06G116900 1.0kb downstream 1.0kb downstream 16964 true Chr06: 9502692-9519655 Glycine max
Glyma.06G116900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9518656-9519655 Glycine max
Glyma.06G116900 2.0kb upstream 2.0kb upstream 17964 true Chr06: 9500692-9518655 Glycine max
Glyma.06G116900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9500692-9502691 Glycine max
Glyma.06G116900 2.0kb downstream 2.0kb downstream 17964 true Chr06: 9502692-9520655 Glycine max
Glyma.06G116900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9518656-9520655 Glycine max
Glyma.06G116900 5.0kb upstream 5.0kb upstream 20964 true Chr06: 9497692-9518655 Glycine max
Glyma.06G116900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9497692-9502691 Glycine max
Glyma.06G116900 5.0kb downstream 5.0kb downstream 20964 true Chr06: 9502692-9523655 Glycine max
Glyma.06G116900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9518656-9523655 Glycine max
Glyma.06G116900 10.0kb upstream 10.0kb upstream 25964 true Chr06: 9492692-9518655 Glycine max
Glyma.06G116900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9492692-9502691 Glycine max
Glyma.06G116900 10.0kb downstream 10.0kb downstream 25964 true Chr06: 9502692-9528655 Glycine max
Glyma.06G116900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9518656-9528655 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299884 5265 Fabidae View MSA
124067492 5270 Rosid View MSA
123740591 5271 Pentapetalae View MSA
122790576 5272 Eudicot View MSA
122047276 5273 Angiosperm View MSA
121346470 5274 Embryophyte View MSA
123428614 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.7576 0.0 15.7808    
cufflinks 2.30489 0.0 10.5771    
cufflinks 13.6728 0.0 43.9688   High
cufflinks 1.73575 0.0 8.25149    
cufflinks 1.73316 0.0 5.23    
cufflinks 0.638166 0.0 2.43917   Low
cufflinks 2.61469 0.0 10.4238    
cufflinks 1.79217 0.0 5.38236    
cufflinks 1.42109 0.0 7.44646    
cufflinks 0.233        
cufflinks 0.1       Low
cufflinks 1.545       High
cufflinks 0.281        
cufflinks 0.307        
cufflinks 0.123       Low
cufflinks 0.616        
cufflinks 0.162        
cufflinks 0.489        
cufflinks 0.578        
cufflinks 0.458        
cufflinks 0.084       Low
cufflinks 0.502        
cufflinks 0.54        
cufflinks 0.116       Low
cufflinks 0.544        
cufflinks 0.114       Low

0 Strain