Gene : Glyma.06G162100 G. max Wm82.a2.v1
Defline:  (1 of 17) PF07899 - Frigida-like protein (Frigida) Genomic Order:  1621
Name:  ? Glyma.06G162100 Secondary Identifier:  ? PAC:30554070
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G162100 0.5kb upstream 0.5kb upstream 4620 true Chr06: 13382300-13386919 Glycine max
Glyma.06G162100 0.5kb upstream 0.5kb upstream 500 false Chr06: 13386420-13386919 Glycine max
Glyma.06G162100 0.5kb downstream 0.5kb downstream 4620 true Chr06: 13381800-13386419 Glycine max
Glyma.06G162100 0.5kb downstream 0.5kb downstream 500 false Chr06: 13381800-13382299 Glycine max
Glyma.06G162100 1.0kb upstream 1.0kb upstream 5120 true Chr06: 13382300-13387419 Glycine max
Glyma.06G162100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 13386420-13387419 Glycine max
Glyma.06G162100 1.0kb downstream 1.0kb downstream 5120 true Chr06: 13381300-13386419 Glycine max
Glyma.06G162100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 13381300-13382299 Glycine max
Glyma.06G162100 2.0kb upstream 2.0kb upstream 6120 true Chr06: 13382300-13388419 Glycine max
Glyma.06G162100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 13386420-13388419 Glycine max
Glyma.06G162100 2.0kb downstream 2.0kb downstream 6120 true Chr06: 13380300-13386419 Glycine max
Glyma.06G162100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 13380300-13382299 Glycine max
Glyma.06G162100 5.0kb upstream 5.0kb upstream 9120 true Chr06: 13382300-13391419 Glycine max
Glyma.06G162100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 13386420-13391419 Glycine max
Glyma.06G162100 5.0kb downstream 5.0kb downstream 9120 true Chr06: 13377300-13386419 Glycine max
Glyma.06G162100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 13377300-13382299 Glycine max
Glyma.06G162100 10.0kb upstream 10.0kb upstream 14120 true Chr06: 13382300-13396419 Glycine max
Glyma.06G162100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 13386420-13396419 Glycine max
Glyma.06G162100 10.0kb downstream 10.0kb downstream 14120 true Chr06: 13372300-13386419 Glycine max
Glyma.06G162100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 13372300-13382299 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297571 5265 Fabidae View MSA
124068332 5270 Rosid View MSA
123746109 5271 Pentapetalae View MSA
122785719 5272 Eudicot View MSA
122043307 5273 Angiosperm View MSA
121310105 5274 Embryophyte View MSA
123347687 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.69419 0.0 13.1324    
cufflinks 4.33201 0.0 12.2431    
cufflinks 5.00048 0.0 13.9301    
cufflinks 4.48383 0.0 12.6107    
cufflinks 4.94381 0.0 13.7475    
cufflinks 5.68458 0.0 15.6317   High
cufflinks 5.72587 0.0 15.7378   High
cufflinks 4.63788 0.0 13.0041    
cufflinks 4.17718 0.0 11.8382   Low
cufflinks 2.974        
cufflinks 4.248       High
cufflinks 2.887        
cufflinks 3.355        
cufflinks 3.293        
cufflinks 3.019        
cufflinks 2.78       Low
cufflinks 5.11       High
cufflinks 3.045        
cufflinks 3.695        
cufflinks 2.925        
cufflinks 3.985        
cufflinks 3.05        
cufflinks 3.38        
cufflinks 4.308       High
cufflinks 2.819       Low
cufflinks 4.499       High

0 Strain