Gene : Glyma.06G165200 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Genomic Order:  1652
Name:  ? Glyma.06G165200 Secondary Identifier:  ? PAC:30554156
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G165200 0.5kb upstream 0.5kb upstream 8211 true Chr06: 13693679-13701889 Glycine max
Glyma.06G165200 0.5kb upstream 0.5kb upstream 500 false Chr06: 13693679-13694178 Glycine max
Glyma.06G165200 0.5kb downstream 0.5kb downstream 8211 true Chr06: 13694179-13702389 Glycine max
Glyma.06G165200 0.5kb downstream 0.5kb downstream 500 false Chr06: 13701890-13702389 Glycine max
Glyma.06G165200 1.0kb upstream 1.0kb upstream 8711 true Chr06: 13693179-13701889 Glycine max
Glyma.06G165200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 13693179-13694178 Glycine max
Glyma.06G165200 1.0kb downstream 1.0kb downstream 8711 true Chr06: 13694179-13702889 Glycine max
Glyma.06G165200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 13701890-13702889 Glycine max
Glyma.06G165200 2.0kb upstream 2.0kb upstream 9711 true Chr06: 13692179-13701889 Glycine max
Glyma.06G165200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 13692179-13694178 Glycine max
Glyma.06G165200 2.0kb downstream 2.0kb downstream 9711 true Chr06: 13694179-13703889 Glycine max
Glyma.06G165200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 13701890-13703889 Glycine max
Glyma.06G165200 5.0kb upstream 5.0kb upstream 12711 true Chr06: 13689179-13701889 Glycine max
Glyma.06G165200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 13689179-13694178 Glycine max
Glyma.06G165200 5.0kb downstream 5.0kb downstream 12711 true Chr06: 13694179-13706889 Glycine max
Glyma.06G165200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 13701890-13706889 Glycine max
Glyma.06G165200 10.0kb upstream 10.0kb upstream 17711 true Chr06: 13684179-13701889 Glycine max
Glyma.06G165200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 13684179-13694178 Glycine max
Glyma.06G165200 10.0kb downstream 10.0kb downstream 17711 true Chr06: 13694179-13711889 Glycine max
Glyma.06G165200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 13701890-13711889 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307634 5265 Fabidae View MSA
124063020 5270 Rosid View MSA
123738110 5271 Pentapetalae View MSA
122796801 5272 Eudicot View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 300.15 0.0 4847.57 High High
cufflinks 78.6606 0.0 437.646 High  
cufflinks 209.417 0.0 2510.07 High High
cufflinks 61.9709 0.0 307.033 High  
cufflinks 33.6441 0.0 127.74 High  
cufflinks 28.5194 0.0 102.872 High Low
cufflinks 72.8008 0.0 385.122 High  
cufflinks 68.2531 0.0 354.226 High  
cufflinks 30.5424 0.0 112.157 High Low
cufflinks 14.018     High  
cufflinks 19.582     High  
cufflinks 53.315     High High
cufflinks 8.096     High Low
cufflinks 5.849       Low
cufflinks 14.956     High  
cufflinks 60.445     High High
cufflinks 6.84     High Low
cufflinks 20.992     High  
cufflinks 25.006     High  
cufflinks 70.282     High High
cufflinks 16.086     High  
cufflinks 65.234     High High
cufflinks 46.32     High  
cufflinks 18.136     High  
cufflinks 67.84     High High
cufflinks 10.715     High  

0 Strain