Gene : Glyma.06G189500 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1895
Name:  ? Glyma.06G189500 Secondary Identifier:  ? PAC:30553443
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G189500 0.5kb upstream 0.5kb upstream 3915 true Chr06: 16582254-16586168 Glycine max
Glyma.06G189500 0.5kb upstream 0.5kb upstream 500 false Chr06: 16585669-16586168 Glycine max
Glyma.06G189500 0.5kb downstream 0.5kb downstream 3915 true Chr06: 16581754-16585668 Glycine max
Glyma.06G189500 0.5kb downstream 0.5kb downstream 500 false Chr06: 16581754-16582253 Glycine max
Glyma.06G189500 1.0kb upstream 1.0kb upstream 4415 true Chr06: 16582254-16586668 Glycine max
Glyma.06G189500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16585669-16586668 Glycine max
Glyma.06G189500 1.0kb downstream 1.0kb downstream 4415 true Chr06: 16581254-16585668 Glycine max
Glyma.06G189500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16581254-16582253 Glycine max
Glyma.06G189500 2.0kb upstream 2.0kb upstream 5415 true Chr06: 16582254-16587668 Glycine max
Glyma.06G189500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16585669-16587668 Glycine max
Glyma.06G189500 2.0kb downstream 2.0kb downstream 5415 true Chr06: 16580254-16585668 Glycine max
Glyma.06G189500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16580254-16582253 Glycine max
Glyma.06G189500 5.0kb upstream 5.0kb upstream 8415 true Chr06: 16582254-16590668 Glycine max
Glyma.06G189500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16585669-16590668 Glycine max
Glyma.06G189500 5.0kb downstream 5.0kb downstream 8415 true Chr06: 16577254-16585668 Glycine max
Glyma.06G189500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16577254-16582253 Glycine max
Glyma.06G189500 10.0kb upstream 10.0kb upstream 13415 true Chr06: 16582254-16595668 Glycine max
Glyma.06G189500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16585669-16595668 Glycine max
Glyma.06G189500 10.0kb downstream 10.0kb downstream 13415 true Chr06: 16572254-16585668 Glycine max
Glyma.06G189500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16572254-16582253 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303386 5265 Fabidae View MSA
124066157 5270 Rosid View MSA
123739123 5271 Pentapetalae View MSA
122794218 5272 Eudicot View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.32489 0.0 22.133   High
cufflinks 4.69295 0.0 15.0206    
cufflinks 3.94723 0.0 15.1536    
cufflinks 3.72599 0.0 14.3711    
cufflinks 4.89989 0.0 17.8213    
cufflinks 4.40315 0.0 16.4133    
cufflinks 3.2861 0.0 11.3406   Low
cufflinks 3.26406 0.0 11.2767   Low
cufflinks 4.63607 0.0 17.0843    
cufflinks 2.066        
cufflinks 0.954        
cufflinks 1.753        
cufflinks 1.821        
cufflinks 2.37       High
cufflinks 0.582       Low
cufflinks 1.596        
cufflinks 2.01        
cufflinks 1.573        
cufflinks 2.37       High
cufflinks 1.431        
cufflinks 0.558       Low
cufflinks 1.857        
cufflinks 2.496       High
cufflinks 1.43        
cufflinks 1.019        
cufflinks 0.939        

0 Strain