Gene : Glyma.06G172700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10836//PTHR10836:SF44 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE Genomic Order:  1727
Name:  ? Glyma.06G172700 Secondary Identifier:  ? PAC:30551462
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ANAEROFRUCAT-PWY Glycine max pathologic  
Gmax ANAGLYCOLYSIS-PWY Glycine max pathologic  
Gmax GLUCONEO-PWY Glycine max pathologic  
Gmax PWY-1042 Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax SUCSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G172700 0.5kb upstream 0.5kb upstream 3566 true Chr06: 14473222-14476787 Glycine max
Glyma.06G172700 0.5kb upstream 0.5kb upstream 500 false Chr06: 14476288-14476787 Glycine max
Glyma.06G172700 0.5kb downstream 0.5kb downstream 3566 true Chr06: 14472722-14476287 Glycine max
Glyma.06G172700 0.5kb downstream 0.5kb downstream 500 false Chr06: 14472722-14473221 Glycine max
Glyma.06G172700 1.0kb upstream 1.0kb upstream 4066 true Chr06: 14473222-14477287 Glycine max
Glyma.06G172700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 14476288-14477287 Glycine max
Glyma.06G172700 1.0kb downstream 1.0kb downstream 4066 true Chr06: 14472222-14476287 Glycine max
Glyma.06G172700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 14472222-14473221 Glycine max
Glyma.06G172700 2.0kb upstream 2.0kb upstream 5066 true Chr06: 14473222-14478287 Glycine max
Glyma.06G172700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 14476288-14478287 Glycine max
Glyma.06G172700 2.0kb downstream 2.0kb downstream 5066 true Chr06: 14471222-14476287 Glycine max
Glyma.06G172700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 14471222-14473221 Glycine max
Glyma.06G172700 5.0kb upstream 5.0kb upstream 8066 true Chr06: 14473222-14481287 Glycine max
Glyma.06G172700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 14476288-14481287 Glycine max
Glyma.06G172700 5.0kb downstream 5.0kb downstream 8066 true Chr06: 14468222-14476287 Glycine max
Glyma.06G172700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 14468222-14473221 Glycine max
Glyma.06G172700 10.0kb upstream 10.0kb upstream 13066 true Chr06: 14473222-14486287 Glycine max
Glyma.06G172700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 14476288-14486287 Glycine max
Glyma.06G172700 10.0kb downstream 10.0kb downstream 13066 true Chr06: 14463222-14476287 Glycine max
Glyma.06G172700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 14463222-14473221 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314378 5265 Fabidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 347.071 0.0 2609.87 High High
cufflinks 390.492 0.0 2984.85 High High
cufflinks 128.784 0.0 983.314 High Low
cufflinks 194.74 0.0 1893.67 High  
cufflinks 294.477 0.0 2339.49 High  
cufflinks 259.153 0.0 1636.11 High  
cufflinks 160.596 0.0 2189.99 High Low
cufflinks 246.489 0.0 2062.63 High  
cufflinks 207.805 0.0 1442.53 High  
cufflinks 164.798     High  
cufflinks 18.081     High Low
cufflinks 76.962     High  
cufflinks 245.813     High High
cufflinks 305.333     High High
cufflinks 43.628     High  
cufflinks 101.984     High  
cufflinks 55.118     High  
cufflinks 88.654     High  
cufflinks 236.787     High High
cufflinks 63.758     High  
cufflinks 42.794     High  
cufflinks 78.176     High  
cufflinks 104.148     High  
cufflinks 28.428     High Low
cufflinks 80.75     High  
cufflinks 49.004     High  

0 Strain