Gene : Glyma.06G196600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23327:SF9 - ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN Genomic Order:  1966
Name:  ? Glyma.06G196600 Secondary Identifier:  ? PAC:30552858
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G196600 0.5kb upstream 0.5kb upstream 15813 true Chr06: 17678747-17694559 Glycine max
Glyma.06G196600 0.5kb upstream 0.5kb upstream 500 false Chr06: 17678747-17679246 Glycine max
Glyma.06G196600 0.5kb downstream 0.5kb downstream 15813 true Chr06: 17679247-17695059 Glycine max
Glyma.06G196600 0.5kb downstream 0.5kb downstream 500 false Chr06: 17694560-17695059 Glycine max
Glyma.06G196600 1.0kb upstream 1.0kb upstream 16313 true Chr06: 17678247-17694559 Glycine max
Glyma.06G196600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 17678247-17679246 Glycine max
Glyma.06G196600 1.0kb downstream 1.0kb downstream 16313 true Chr06: 17679247-17695559 Glycine max
Glyma.06G196600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 17694560-17695559 Glycine max
Glyma.06G196600 2.0kb upstream 2.0kb upstream 17313 true Chr06: 17677247-17694559 Glycine max
Glyma.06G196600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 17677247-17679246 Glycine max
Glyma.06G196600 2.0kb downstream 2.0kb downstream 17313 true Chr06: 17679247-17696559 Glycine max
Glyma.06G196600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 17694560-17696559 Glycine max
Glyma.06G196600 5.0kb upstream 5.0kb upstream 20313 true Chr06: 17674247-17694559 Glycine max
Glyma.06G196600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 17674247-17679246 Glycine max
Glyma.06G196600 5.0kb downstream 5.0kb downstream 20313 true Chr06: 17679247-17699559 Glycine max
Glyma.06G196600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 17694560-17699559 Glycine max
Glyma.06G196600 10.0kb upstream 10.0kb upstream 25313 true Chr06: 17669247-17694559 Glycine max
Glyma.06G196600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 17669247-17679246 Glycine max
Glyma.06G196600 10.0kb downstream 10.0kb downstream 25313 true Chr06: 17679247-17704559 Glycine max
Glyma.06G196600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 17694560-17704559 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300549 5265 Fabidae View MSA
124060590 5270 Rosid View MSA
123742205 5271 Pentapetalae View MSA
122791083 5272 Eudicot View MSA
122048007 5273 Angiosperm View MSA
121347127 5274 Embryophyte View MSA
123427898 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.2845 0.0 48.3734   High
cufflinks 3.80539 0.0 18.0727    
cufflinks 2.41992 0.0 8.06624    
cufflinks 3.73953 0.0 17.65    
cufflinks 2.40439 0.0 11.402    
cufflinks 3.54337 0.0 13.6305    
cufflinks 2.47439 0.0 11.4326    
cufflinks 3.90468 0.0 15.3739    
cufflinks 3.21954 0.0 9.81727    
cufflinks 0.286        
cufflinks 0.099       Low
cufflinks 0.233        
cufflinks 0.281        
cufflinks 0.154        
cufflinks 0.104       Low
cufflinks 0.455       High
cufflinks 0.184        
cufflinks 0.246        
cufflinks 0.31        
cufflinks 0.23        
cufflinks 0.198        
cufflinks 0.353        
cufflinks 0.42       High
cufflinks 0.168        
cufflinks 0.36       High
cufflinks 0.139       Low

0 Strain