Gene : Glyma.06G227700 G. max Wm82.a2.v1
Defline:  (1 of 11) PTHR24015:SF884 - PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Genomic Order:  2277
Name:  ? Glyma.06G227700 Secondary Identifier:  ? PAC:30552058
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G227700 0.5kb upstream 0.5kb upstream 2425 true Chr06: 34506153-34508577 Glycine max
Glyma.06G227700 0.5kb upstream 0.5kb upstream 500 false Chr06: 34508078-34508577 Glycine max
Glyma.06G227700 0.5kb downstream 0.5kb downstream 2425 true Chr06: 34505653-34508077 Glycine max
Glyma.06G227700 0.5kb downstream 0.5kb downstream 500 false Chr06: 34505653-34506152 Glycine max
Glyma.06G227700 1.0kb upstream 1.0kb upstream 2925 true Chr06: 34506153-34509077 Glycine max
Glyma.06G227700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 34508078-34509077 Glycine max
Glyma.06G227700 1.0kb downstream 1.0kb downstream 2925 true Chr06: 34505153-34508077 Glycine max
Glyma.06G227700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 34505153-34506152 Glycine max
Glyma.06G227700 2.0kb upstream 2.0kb upstream 3925 true Chr06: 34506153-34510077 Glycine max
Glyma.06G227700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 34508078-34510077 Glycine max
Glyma.06G227700 2.0kb downstream 2.0kb downstream 3925 true Chr06: 34504153-34508077 Glycine max
Glyma.06G227700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 34504153-34506152 Glycine max
Glyma.06G227700 5.0kb upstream 5.0kb upstream 6925 true Chr06: 34506153-34513077 Glycine max
Glyma.06G227700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 34508078-34513077 Glycine max
Glyma.06G227700 5.0kb downstream 5.0kb downstream 6925 true Chr06: 34501153-34508077 Glycine max
Glyma.06G227700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 34501153-34506152 Glycine max
Glyma.06G227700 10.0kb upstream 10.0kb upstream 11925 true Chr06: 34506153-34518077 Glycine max
Glyma.06G227700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 34508078-34518077 Glycine max
Glyma.06G227700 10.0kb downstream 10.0kb downstream 11925 true Chr06: 34496153-34508077 Glycine max
Glyma.06G227700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 34496153-34506152 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307680 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.65782 0.0 8.30125    
cufflinks 2.95327 0.0 9.11964    
cufflinks 1.59806 0.0 5.37266   Low
cufflinks 2.72388 0.0 8.49603    
cufflinks 2.55229 0.0 7.99704    
cufflinks 1.29099 0.0 4.42511   Low
cufflinks 3.02719 0.0 9.25811    
cufflinks 2.5248 0.0 7.96483    
cufflinks 2.48094 0.0 7.82879    
cufflinks 1.776        
cufflinks 0.663       Low
cufflinks 3.924        
cufflinks 1.677        
cufflinks 2.579        
cufflinks 2.262        
cufflinks 3.669        
cufflinks 0.876        
cufflinks 4.898        
cufflinks 5.096       High
cufflinks 4.199        
cufflinks 0.34       Low
cufflinks 5.047       High
cufflinks 4.519        
cufflinks 0.73       Low
cufflinks 4.101        
cufflinks 0.575       Low

0 Strain