Gene : Glyma.06G319700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR27000:SF52 - LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED Genomic Order:  3197
Name:  ? Glyma.06G319700 Secondary Identifier:  ? PAC:30549740
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G319700 0.5kb upstream 0.5kb upstream 2568 true Chr06: 50855753-50858320 Glycine max
Glyma.06G319700 0.5kb upstream 0.5kb upstream 500 false Chr06: 50855753-50856252 Glycine max
Glyma.06G319700 0.5kb downstream 0.5kb downstream 2568 true Chr06: 50856253-50858820 Glycine max
Glyma.06G319700 0.5kb downstream 0.5kb downstream 500 false Chr06: 50858321-50858820 Glycine max
Glyma.06G319700 1.0kb upstream 1.0kb upstream 3068 true Chr06: 50855253-50858320 Glycine max
Glyma.06G319700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 50855253-50856252 Glycine max
Glyma.06G319700 1.0kb downstream 1.0kb downstream 3068 true Chr06: 50856253-50859320 Glycine max
Glyma.06G319700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 50858321-50859320 Glycine max
Glyma.06G319700 2.0kb upstream 2.0kb upstream 4068 true Chr06: 50854253-50858320 Glycine max
Glyma.06G319700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 50854253-50856252 Glycine max
Glyma.06G319700 2.0kb downstream 2.0kb downstream 4068 true Chr06: 50856253-50860320 Glycine max
Glyma.06G319700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 50858321-50860320 Glycine max
Glyma.06G319700 5.0kb upstream 5.0kb upstream 7068 true Chr06: 50851253-50858320 Glycine max
Glyma.06G319700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 50851253-50856252 Glycine max
Glyma.06G319700 5.0kb downstream 5.0kb downstream 7068 true Chr06: 50856253-50863320 Glycine max
Glyma.06G319700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 50858321-50863320 Glycine max
Glyma.06G319700 10.0kb upstream 10.0kb upstream 12068 true Chr06: 50846253-50858320 Glycine max
Glyma.06G319700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 50846253-50856252 Glycine max
Glyma.06G319700 10.0kb downstream 10.0kb downstream 12068 true Chr06: 50856253-50868320 Glycine max
Glyma.06G319700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 50858321-50868320 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301328 5265 Fabidae View MSA
124071295 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.59106 0.0 13.4508    
cufflinks 10.1332 0.0 27.4855    
cufflinks 974.378 0.0 6395.49 High High
cufflinks 198.172 0.0 721.417 High High
cufflinks 1.14146 0.0 3.99181   Low
cufflinks 2.8665 0.0 8.94478    
cufflinks 18.3043 0.0 48.8335    
cufflinks 9.59137 0.0 26.0967    
cufflinks 1.41742 0.0 4.85222    
cufflinks 5.772        
cufflinks 2.788        
cufflinks 420.337     High High
cufflinks 0.419       Low
cufflinks 0.479       Low
cufflinks 1.804        
cufflinks 5.271        
cufflinks 0.423       Low
cufflinks 34.229     High High
cufflinks 9.251     High  
cufflinks 4.993        
cufflinks 2.807        
cufflinks 8.05     High  
cufflinks 4.082        
cufflinks 2.364        
cufflinks 3.979        
cufflinks 3.43        

0 Strain