Gene : Glyma.06G320900 G. max Wm82.a2.v1

Defline:  (1 of 3) PTHR11689:SF77 - CHLORIDE CHANNEL PROTEIN CLC-F Genomic Order:  3209
Name:  ? Glyma.06G320900 Secondary Identifier:  ? PAC:30551837

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G320900 0.5kb upstream 0.5kb upstream 11623 true Chr06: 50957993-50969615 Glycine max
Glyma.06G320900 0.5kb upstream 0.5kb upstream 500 false Chr06: 50969116-50969615 Glycine max
Glyma.06G320900 0.5kb downstream 0.5kb downstream 11623 true Chr06: 50957493-50969115 Glycine max
Glyma.06G320900 0.5kb downstream 0.5kb downstream 500 false Chr06: 50957493-50957992 Glycine max
Glyma.06G320900 1.0kb upstream 1.0kb upstream 12123 true Chr06: 50957993-50970115 Glycine max
Glyma.06G320900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 50969116-50970115 Glycine max
Glyma.06G320900 1.0kb downstream 1.0kb downstream 12123 true Chr06: 50956993-50969115 Glycine max
Glyma.06G320900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 50956993-50957992 Glycine max
Glyma.06G320900 2.0kb upstream 2.0kb upstream 13123 true Chr06: 50957993-50971115 Glycine max
Glyma.06G320900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 50969116-50971115 Glycine max
Glyma.06G320900 2.0kb downstream 2.0kb downstream 13123 true Chr06: 50955993-50969115 Glycine max
Glyma.06G320900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 50955993-50957992 Glycine max
Glyma.06G320900 5.0kb upstream 5.0kb upstream 16123 true Chr06: 50957993-50974115 Glycine max
Glyma.06G320900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 50969116-50974115 Glycine max
Glyma.06G320900 5.0kb downstream 5.0kb downstream 16123 true Chr06: 50952993-50969115 Glycine max
Glyma.06G320900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 50952993-50957992 Glycine max
Glyma.06G320900 10.0kb upstream 10.0kb upstream 21123 true Chr06: 50957993-50979115 Glycine max
Glyma.06G320900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 50969116-50979115 Glycine max
Glyma.06G320900 10.0kb downstream 10.0kb downstream 21123 true Chr06: 50947993-50969115 Glycine max
Glyma.06G320900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 50947993-50957992 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306331 5265 Fabidae View MSA
124064511 5270 Rosid View MSA
123748133 5271 Pentapetalae View MSA
122793511 5272 Eudicot View MSA
122047702 5273 Angiosperm View MSA
121347705 5274 Embryophyte View MSA
123427001 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.79936 0.0 20.891    
cufflinks 5.43589 0.0 14.8114   Low
cufflinks 18.2337 0.0 49.589   High
cufflinks 11.1223 0.0 29.6841    
cufflinks 8.02978 0.0 21.4919    
cufflinks 15.017 0.0 40.3697   High
cufflinks 8.54612 0.0 22.839    
cufflinks 10.4691 0.0 27.9304    
cufflinks 8.49805 0.0 22.7155    
cufflinks 2.2        
cufflinks 2.178        
cufflinks 3.118       High
cufflinks 2.105        
cufflinks 1.989        
cufflinks 2.31        
cufflinks 1.811        
cufflinks 2.181        
cufflinks 2.244        
cufflinks 1.594       Low
cufflinks 1.562       Low
cufflinks 2.167        
cufflinks 1.661        
cufflinks 1.621       Low
cufflinks 2.938       High
cufflinks 1.367       Low
cufflinks 2.311        

0 Strain