Gene : Glyma.07G004200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31288:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MXL8-RELATED Genomic Order:  42
Name:  ? Glyma.07G004200 Secondary Identifier:  ? PAC:30494968
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G004200 0.5kb upstream 0.5kb upstream 4438 true Chr07: 309652-314089 Glycine max
Glyma.07G004200 0.5kb upstream 0.5kb upstream 500 false Chr07: 309652-310151 Glycine max
Glyma.07G004200 0.5kb downstream 0.5kb downstream 4438 true Chr07: 310152-314589 Glycine max
Glyma.07G004200 0.5kb downstream 0.5kb downstream 500 false Chr07: 314090-314589 Glycine max
Glyma.07G004200 1.0kb upstream 1.0kb upstream 4938 true Chr07: 309152-314089 Glycine max
Glyma.07G004200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 309152-310151 Glycine max
Glyma.07G004200 1.0kb downstream 1.0kb downstream 4938 true Chr07: 310152-315089 Glycine max
Glyma.07G004200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 314090-315089 Glycine max
Glyma.07G004200 2.0kb upstream 2.0kb upstream 5938 true Chr07: 308152-314089 Glycine max
Glyma.07G004200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 308152-310151 Glycine max
Glyma.07G004200 2.0kb downstream 2.0kb downstream 5938 true Chr07: 310152-316089 Glycine max
Glyma.07G004200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 314090-316089 Glycine max
Glyma.07G004200 5.0kb upstream 5.0kb upstream 8938 true Chr07: 305152-314089 Glycine max
Glyma.07G004200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 305152-310151 Glycine max
Glyma.07G004200 5.0kb downstream 5.0kb downstream 8938 true Chr07: 310152-319089 Glycine max
Glyma.07G004200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 314090-319089 Glycine max
Glyma.07G004200 10.0kb upstream 10.0kb upstream 13938 true Chr07: 300152-314089 Glycine max
Glyma.07G004200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 300152-310151 Glycine max
Glyma.07G004200 10.0kb downstream 10.0kb downstream 13938 true Chr07: 310152-324089 Glycine max
Glyma.07G004200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 314090-324089 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041437 5273 Angiosperm View MSA
122304127 5265 Fabidae View MSA
124067612 5270 Rosid View MSA
123741790 5271 Pentapetalae View MSA
122786128 5272 Eudicot View MSA
121350497 5274 Embryophyte View MSA
123381757 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.88278 0.0 18.962   Low
cufflinks 14.2305 0.0 37.9715    
cufflinks 13.4322 0.0 35.8429    
cufflinks 48.6652 0.0 140.115 High  
cufflinks 48.1947 0.0 137.869 High  
cufflinks 81.9413 0.0 254.683 High High
cufflinks 7.73434 0.0 21.1707   Low
cufflinks 49.6882 0.0 143.305 High  
cufflinks 40.6863 0.0 114.473 High  
cufflinks 20.932     High  
cufflinks 2.24       Low
cufflinks 10.321     High  
cufflinks 47.737     High High
cufflinks 51.718     High High
cufflinks 1.453       Low
cufflinks 4.477        
cufflinks 22.612     High High
cufflinks 18.427     High  
cufflinks 7.556     High  
cufflinks 4.451        
cufflinks 5.332        
cufflinks 5.233        
cufflinks 6.978        
cufflinks 2.292       Low
cufflinks 4.658        
cufflinks 9.323     High  

0 Strain