Gene : Glyma.07G058700 G. max Wm82.a2.v1
Defline:  (1 of 2) PF08167 - rRNA processing/ribosome biogenesis (RIX1) Genomic Order:  587
Name:  ? Glyma.07G058700 Secondary Identifier:  ? PAC:30492066
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G058700 0.5kb upstream 0.5kb upstream 10012 true Chr07: 5250699-5260710 Glycine max
Glyma.07G058700 0.5kb upstream 0.5kb upstream 500 false Chr07: 5250699-5251198 Glycine max
Glyma.07G058700 0.5kb downstream 0.5kb downstream 10012 true Chr07: 5251199-5261210 Glycine max
Glyma.07G058700 0.5kb downstream 0.5kb downstream 500 false Chr07: 5260711-5261210 Glycine max
Glyma.07G058700 1.0kb upstream 1.0kb upstream 10512 true Chr07: 5250199-5260710 Glycine max
Glyma.07G058700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 5250199-5251198 Glycine max
Glyma.07G058700 1.0kb downstream 1.0kb downstream 10512 true Chr07: 5251199-5261710 Glycine max
Glyma.07G058700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 5260711-5261710 Glycine max
Glyma.07G058700 2.0kb upstream 2.0kb upstream 11512 true Chr07: 5249199-5260710 Glycine max
Glyma.07G058700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 5249199-5251198 Glycine max
Glyma.07G058700 2.0kb downstream 2.0kb downstream 11512 true Chr07: 5251199-5262710 Glycine max
Glyma.07G058700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 5260711-5262710 Glycine max
Glyma.07G058700 5.0kb upstream 5.0kb upstream 14512 true Chr07: 5246199-5260710 Glycine max
Glyma.07G058700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 5246199-5251198 Glycine max
Glyma.07G058700 5.0kb downstream 5.0kb downstream 14512 true Chr07: 5251199-5265710 Glycine max
Glyma.07G058700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 5260711-5265710 Glycine max
Glyma.07G058700 10.0kb upstream 10.0kb upstream 19512 true Chr07: 5241199-5260710 Glycine max
Glyma.07G058700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 5241199-5251198 Glycine max
Glyma.07G058700 10.0kb downstream 10.0kb downstream 19512 true Chr07: 5251199-5270710 Glycine max
Glyma.07G058700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 5260711-5270710 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305656 5265 Fabidae View MSA
124050381 5270 Rosid View MSA
123750218 5271 Pentapetalae View MSA
122787219 5272 Eudicot View MSA
122050850 5273 Angiosperm View MSA
121349026 5274 Embryophyte View MSA
123425273 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.28061 0.0 6.8008   Low
cufflinks 3.69305 0.0 10.3653    
cufflinks 2.77571 0.0 8.02747    
cufflinks 3.67852 0.0 10.3224    
cufflinks 6.27726 0.0 16.9522   High
cufflinks 3.21118 0.0 9.15012    
cufflinks 4.68853 0.0 12.9054    
cufflinks 1.79686 0.0 5.52136   Low
cufflinks 3.80429 0.0 10.6445    
cufflinks 0.526       Low
cufflinks 0.496       Low
cufflinks 1.381        
cufflinks 2.689       High
cufflinks 3.794       High
cufflinks 0.91        
cufflinks 1.065        
cufflinks 0.645        
cufflinks 1.189        
cufflinks 1.983       High
cufflinks 0.81        
cufflinks 0.672        
cufflinks 0.707        
cufflinks 0.881        
cufflinks 0.535       Low
cufflinks 0.986        
cufflinks 0.868        

0 Strain