Gene : Glyma.07G109000 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1090
Name:  ? Glyma.07G109000 Secondary Identifier:  ? PAC:30491574
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G109000 0.5kb upstream 0.5kb upstream 3339 true Chr07: 10737980-10741318 Glycine max
Glyma.07G109000 0.5kb upstream 0.5kb upstream 500 false Chr07: 10740819-10741318 Glycine max
Glyma.07G109000 0.5kb downstream 0.5kb downstream 3339 true Chr07: 10737480-10740818 Glycine max
Glyma.07G109000 0.5kb downstream 0.5kb downstream 500 false Chr07: 10737480-10737979 Glycine max
Glyma.07G109000 1.0kb upstream 1.0kb upstream 3839 true Chr07: 10737980-10741818 Glycine max
Glyma.07G109000 1.0kb upstream 1.0kb upstream 1000 false Chr07: 10740819-10741818 Glycine max
Glyma.07G109000 1.0kb downstream 1.0kb downstream 3839 true Chr07: 10736980-10740818 Glycine max
Glyma.07G109000 1.0kb downstream 1.0kb downstream 1000 false Chr07: 10736980-10737979 Glycine max
Glyma.07G109000 2.0kb upstream 2.0kb upstream 4839 true Chr07: 10737980-10742818 Glycine max
Glyma.07G109000 2.0kb upstream 2.0kb upstream 2000 false Chr07: 10740819-10742818 Glycine max
Glyma.07G109000 2.0kb downstream 2.0kb downstream 4839 true Chr07: 10735980-10740818 Glycine max
Glyma.07G109000 2.0kb downstream 2.0kb downstream 2000 false Chr07: 10735980-10737979 Glycine max
Glyma.07G109000 5.0kb upstream 5.0kb upstream 7839 true Chr07: 10737980-10745818 Glycine max
Glyma.07G109000 5.0kb upstream 5.0kb upstream 5000 false Chr07: 10740819-10745818 Glycine max
Glyma.07G109000 5.0kb downstream 5.0kb downstream 7839 true Chr07: 10732980-10740818 Glycine max
Glyma.07G109000 5.0kb downstream 5.0kb downstream 5000 false Chr07: 10732980-10737979 Glycine max
Glyma.07G109000 10.0kb upstream 10.0kb upstream 12839 true Chr07: 10737980-10750818 Glycine max
Glyma.07G109000 10.0kb upstream 10.0kb upstream 10000 false Chr07: 10740819-10750818 Glycine max
Glyma.07G109000 10.0kb downstream 10.0kb downstream 12839 true Chr07: 10727980-10740818 Glycine max
Glyma.07G109000 10.0kb downstream 10.0kb downstream 10000 false Chr07: 10727980-10737979 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298784 5265 Fabidae View MSA
124036596 5270 Rosid View MSA
123754339 5271 Pentapetalae View MSA
122798038 5272 Eudicot View MSA
122046913 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.78191 0.0 22.9057    
cufflinks 3.61614 0.0 11.0148    
cufflinks 2.6653 0.0 8.80957   Low
cufflinks 6.04309 0.0 20.8868    
cufflinks 5.23457 0.0 18.4688    
cufflinks 1.58531 0.0 6.05515   Low
cufflinks 5.61896 0.0 19.4757    
cufflinks 4.35863 0.0 16.0582    
cufflinks 6.78823 0.0 23.2475    
cufflinks 1.544        
cufflinks 1.055       Low
cufflinks 2.534        
cufflinks 2.421        
cufflinks 3.286       High
cufflinks 2.852       High
cufflinks 1.57        
cufflinks 1.726        
cufflinks 2.094        
cufflinks 2.987       High
cufflinks 0.824       Low
cufflinks 1.089        
cufflinks 1.017       Low
cufflinks 1.659        
cufflinks 0.981       Low
cufflinks 1.096        
cufflinks 1.921        

0 Strain