Gene : Glyma.07G090100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Genomic Order:  901
Name:  ? Glyma.07G090100 Secondary Identifier:  ? PAC:30491434
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6441 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G090100 0.5kb upstream 0.5kb upstream 3011 true Chr07: 8433837-8436847 Glycine max
Glyma.07G090100 0.5kb upstream 0.5kb upstream 500 false Chr07: 8433837-8434336 Glycine max
Glyma.07G090100 0.5kb downstream 0.5kb downstream 3011 true Chr07: 8434337-8437347 Glycine max
Glyma.07G090100 0.5kb downstream 0.5kb downstream 500 false Chr07: 8436848-8437347 Glycine max
Glyma.07G090100 1.0kb upstream 1.0kb upstream 3511 true Chr07: 8433337-8436847 Glycine max
Glyma.07G090100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 8433337-8434336 Glycine max
Glyma.07G090100 1.0kb downstream 1.0kb downstream 3511 true Chr07: 8434337-8437847 Glycine max
Glyma.07G090100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 8436848-8437847 Glycine max
Glyma.07G090100 2.0kb upstream 2.0kb upstream 4511 true Chr07: 8432337-8436847 Glycine max
Glyma.07G090100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 8432337-8434336 Glycine max
Glyma.07G090100 2.0kb downstream 2.0kb downstream 4511 true Chr07: 8434337-8438847 Glycine max
Glyma.07G090100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 8436848-8438847 Glycine max
Glyma.07G090100 5.0kb upstream 5.0kb upstream 7511 true Chr07: 8429337-8436847 Glycine max
Glyma.07G090100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 8429337-8434336 Glycine max
Glyma.07G090100 5.0kb downstream 5.0kb downstream 7511 true Chr07: 8434337-8441847 Glycine max
Glyma.07G090100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 8436848-8441847 Glycine max
Glyma.07G090100 10.0kb upstream 10.0kb upstream 12511 true Chr07: 8424337-8436847 Glycine max
Glyma.07G090100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 8424337-8434336 Glycine max
Glyma.07G090100 10.0kb downstream 10.0kb downstream 12511 true Chr07: 8434337-8446847 Glycine max
Glyma.07G090100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 8436848-8446847 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122681170 5272 Eudicot View MSA
122238831 5265 Fabidae Singleton cluster - no MSA
123984177 5270 Rosid Singleton cluster - no MSA
123647171 5271 Pentapetalae View MSA
122051979 5273 Angiosperm View MSA
121312850 5274 Embryophyte View MSA
123349986 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.41824 0.0 4.5966    
cufflinks 1.82504 0.0 5.73873    
cufflinks 0.851791 0.0 2.94653   Low
cufflinks 2.16733 0.0 6.63086    
cufflinks 1.8152 0.0 5.66898    
cufflinks 0.88861 0.0 3.05108   Low
cufflinks 2.64792 0.0 7.84638   High
cufflinks 1.64885 0.0 5.25312    
cufflinks 1.42672 0.0 4.62548    
cufflinks 1.619        
cufflinks 0.537       Low
cufflinks 2.157       High
cufflinks 1.304        
cufflinks 1.8        
cufflinks 0.636       Low
cufflinks 1.369        
cufflinks 0.811        
cufflinks 1.656        
cufflinks 2.006       High
cufflinks 1.381        
cufflinks 0.613       Low
cufflinks 1.523        
cufflinks 1.662        
cufflinks 0.754        
cufflinks 1.15        
cufflinks 0.595       Low

0 Strain