Gene : Glyma.07G177500 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1775
Name:  ? Glyma.07G177500 Secondary Identifier:  ? PAC:30493267
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G177500 0.5kb upstream 0.5kb upstream 7442 true Chr07: 33511772-33519213 Glycine max
Glyma.07G177500 0.5kb upstream 0.5kb upstream 500 false Chr07: 33511772-33512271 Glycine max
Glyma.07G177500 0.5kb downstream 0.5kb downstream 7442 true Chr07: 33512272-33519713 Glycine max
Glyma.07G177500 0.5kb downstream 0.5kb downstream 500 false Chr07: 33519214-33519713 Glycine max
Glyma.07G177500 1.0kb upstream 1.0kb upstream 7942 true Chr07: 33511272-33519213 Glycine max
Glyma.07G177500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 33511272-33512271 Glycine max
Glyma.07G177500 1.0kb downstream 1.0kb downstream 7942 true Chr07: 33512272-33520213 Glycine max
Glyma.07G177500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 33519214-33520213 Glycine max
Glyma.07G177500 2.0kb upstream 2.0kb upstream 8942 true Chr07: 33510272-33519213 Glycine max
Glyma.07G177500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 33510272-33512271 Glycine max
Glyma.07G177500 2.0kb downstream 2.0kb downstream 8942 true Chr07: 33512272-33521213 Glycine max
Glyma.07G177500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 33519214-33521213 Glycine max
Glyma.07G177500 5.0kb upstream 5.0kb upstream 11942 true Chr07: 33507272-33519213 Glycine max
Glyma.07G177500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 33507272-33512271 Glycine max
Glyma.07G177500 5.0kb downstream 5.0kb downstream 11942 true Chr07: 33512272-33524213 Glycine max
Glyma.07G177500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 33519214-33524213 Glycine max
Glyma.07G177500 10.0kb upstream 10.0kb upstream 16942 true Chr07: 33502272-33519213 Glycine max
Glyma.07G177500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 33502272-33512271 Glycine max
Glyma.07G177500 10.0kb downstream 10.0kb downstream 16942 true Chr07: 33512272-33529213 Glycine max
Glyma.07G177500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 33519214-33529213 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238594 5265 Fabidae Singleton cluster - no MSA
124063635 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0446391 0.0 0.181851 Low  
cufflinks 0.0752754 0.0 0.29995 Low  
cufflinks 0.0340501 0.0 0.140474 Low  
cufflinks 0.0418998 0.0 0.171111 Low  
cufflinks 0.0282342 0.0 0.118156 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0864038 0.0 0.342471 Low High
cufflinks 0.0766521 0.0 0.305199 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain