Gene : Glyma.07G196800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11771//PTHR11771:SF56 - LIPOXYGENASE Genomic Order:  1968
Name:  ? Glyma.07G196800 Secondary Identifier:  ? PAC:30494070
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G196800 0.5kb upstream 0.5kb upstream 10478 true Chr07: 36508505-36518982 Glycine max
Glyma.07G196800 0.5kb upstream 0.5kb upstream 500 false Chr07: 36508505-36509004 Glycine max
Glyma.07G196800 0.5kb downstream 0.5kb downstream 10478 true Chr07: 36509005-36519482 Glycine max
Glyma.07G196800 0.5kb downstream 0.5kb downstream 500 false Chr07: 36518983-36519482 Glycine max
Glyma.07G196800 1.0kb upstream 1.0kb upstream 10978 true Chr07: 36508005-36518982 Glycine max
Glyma.07G196800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 36508005-36509004 Glycine max
Glyma.07G196800 1.0kb downstream 1.0kb downstream 10978 true Chr07: 36509005-36519982 Glycine max
Glyma.07G196800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 36518983-36519982 Glycine max
Glyma.07G196800 2.0kb upstream 2.0kb upstream 11978 true Chr07: 36507005-36518982 Glycine max
Glyma.07G196800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 36507005-36509004 Glycine max
Glyma.07G196800 2.0kb downstream 2.0kb downstream 11978 true Chr07: 36509005-36520982 Glycine max
Glyma.07G196800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 36518983-36520982 Glycine max
Glyma.07G196800 5.0kb upstream 5.0kb upstream 14978 true Chr07: 36504005-36518982 Glycine max
Glyma.07G196800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 36504005-36509004 Glycine max
Glyma.07G196800 5.0kb downstream 5.0kb downstream 14978 true Chr07: 36509005-36523982 Glycine max
Glyma.07G196800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 36518983-36523982 Glycine max
Glyma.07G196800 10.0kb upstream 10.0kb upstream 19978 true Chr07: 36499005-36518982 Glycine max
Glyma.07G196800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 36499005-36509004 Glycine max
Glyma.07G196800 10.0kb downstream 10.0kb downstream 19978 true Chr07: 36509005-36528982 Glycine max
Glyma.07G196800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 36518983-36528982 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313954 5265 Fabidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.120295 0.0 0.462681 Low  
cufflinks 0.135891 0.0 0.519617 Low  
cufflinks 0.36856 0.0 1.3399    
cufflinks 2.32584 0.0 6.908    
cufflinks 4.52157 0.0 12.4888    
cufflinks 36.6876 0.0 106.895 High High
cufflinks 0.0370166 0.0 0.148972 Low Low
cufflinks 0.0409181 0.0 0.163859 Low Low
cufflinks 9.43966 0.0 25.1918   High
cufflinks 0.747        
cufflinks 3.531        
cufflinks 0.733        
cufflinks 5.097        
cufflinks 1.16        
cufflinks 1.617        
cufflinks 0.003     Low Low
cufflinks 10.124     High High
cufflinks 0.623        
cufflinks 3.147        
cufflinks 0.011     Low Low
cufflinks 3.66        
cufflinks 0.007     Low Low
cufflinks 0.249        
cufflinks 4.547        
cufflinks 0.018     Low Low
cufflinks 12.297     High High

0 Strain