Gene : Glyma.07G180900 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR32370:SF6 - ROOT PHOTOTROPISM PROTEIN 3 Genomic Order:  1809
Name:  ? Glyma.07G180900 Secondary Identifier:  ? PAC:30495576
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G180900 0.5kb upstream 0.5kb upstream 4471 true Chr07: 34906124-34910594 Glycine max
Glyma.07G180900 0.5kb upstream 0.5kb upstream 500 false Chr07: 34906124-34906623 Glycine max
Glyma.07G180900 0.5kb downstream 0.5kb downstream 4471 true Chr07: 34906624-34911094 Glycine max
Glyma.07G180900 0.5kb downstream 0.5kb downstream 500 false Chr07: 34910595-34911094 Glycine max
Glyma.07G180900 1.0kb upstream 1.0kb upstream 4971 true Chr07: 34905624-34910594 Glycine max
Glyma.07G180900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 34905624-34906623 Glycine max
Glyma.07G180900 1.0kb downstream 1.0kb downstream 4971 true Chr07: 34906624-34911594 Glycine max
Glyma.07G180900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 34910595-34911594 Glycine max
Glyma.07G180900 2.0kb upstream 2.0kb upstream 5971 true Chr07: 34904624-34910594 Glycine max
Glyma.07G180900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 34904624-34906623 Glycine max
Glyma.07G180900 2.0kb downstream 2.0kb downstream 5971 true Chr07: 34906624-34912594 Glycine max
Glyma.07G180900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 34910595-34912594 Glycine max
Glyma.07G180900 5.0kb upstream 5.0kb upstream 8971 true Chr07: 34901624-34910594 Glycine max
Glyma.07G180900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 34901624-34906623 Glycine max
Glyma.07G180900 5.0kb downstream 5.0kb downstream 8971 true Chr07: 34906624-34915594 Glycine max
Glyma.07G180900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 34910595-34915594 Glycine max
Glyma.07G180900 10.0kb upstream 10.0kb upstream 13971 true Chr07: 34896624-34910594 Glycine max
Glyma.07G180900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 34896624-34906623 Glycine max
Glyma.07G180900 10.0kb downstream 10.0kb downstream 13971 true Chr07: 34906624-34920594 Glycine max
Glyma.07G180900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 34910595-34920594 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304495 5265 Fabidae View MSA
124063481 5270 Rosid View MSA
123746549 5271 Pentapetalae View MSA
122794613 5272 Eudicot View MSA
122049761 5273 Angiosperm View MSA
121347435 5274 Embryophyte View MSA
123380549 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0825584 0.0 0.321679 Low Low
cufflinks 0.80546 0.0 3.09117    
cufflinks 0.43008 0.0 1.88476    
cufflinks 0.631197 0.0 3.44408    
cufflinks 5.02741 0.0 15.617   High
cufflinks 0.416938 0.0 1.8508    
cufflinks 0.0676914 0.0 0.265599 Low Low
cufflinks 1.7731 0.0 5.4038    
cufflinks 0.478354 0.0 2.70687    
cufflinks 0.975       High
cufflinks 0.033     Low Low
cufflinks 0.502        
cufflinks 0.185        
cufflinks 0.307        
cufflinks 0.019     Low Low
cufflinks 0.472        
cufflinks 0.262        
cufflinks 1.134       High
cufflinks 0.591        
cufflinks 0.741        
cufflinks 0.097        
cufflinks 0.486        
cufflinks 0.288        
cufflinks 0.026     Low Low
cufflinks 0.423        
cufflinks 0.107        

0 Strain