Gene : Glyma.07G214300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  2143
Name:  ? Glyma.07G214300 Secondary Identifier:  ? PAC:30495072
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G214300 0.5kb upstream 0.5kb upstream 2676 true Chr07: 38646812-38649487 Glycine max
Glyma.07G214300 0.5kb upstream 0.5kb upstream 500 false Chr07: 38646812-38647311 Glycine max
Glyma.07G214300 0.5kb downstream 0.5kb downstream 2676 true Chr07: 38647312-38649987 Glycine max
Glyma.07G214300 0.5kb downstream 0.5kb downstream 500 false Chr07: 38649488-38649987 Glycine max
Glyma.07G214300 1.0kb upstream 1.0kb upstream 3176 true Chr07: 38646312-38649487 Glycine max
Glyma.07G214300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 38646312-38647311 Glycine max
Glyma.07G214300 1.0kb downstream 1.0kb downstream 3176 true Chr07: 38647312-38650487 Glycine max
Glyma.07G214300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 38649488-38650487 Glycine max
Glyma.07G214300 2.0kb upstream 2.0kb upstream 4176 true Chr07: 38645312-38649487 Glycine max
Glyma.07G214300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 38645312-38647311 Glycine max
Glyma.07G214300 2.0kb downstream 2.0kb downstream 4176 true Chr07: 38647312-38651487 Glycine max
Glyma.07G214300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 38649488-38651487 Glycine max
Glyma.07G214300 5.0kb upstream 5.0kb upstream 7176 true Chr07: 38642312-38649487 Glycine max
Glyma.07G214300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 38642312-38647311 Glycine max
Glyma.07G214300 5.0kb downstream 5.0kb downstream 7176 true Chr07: 38647312-38654487 Glycine max
Glyma.07G214300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 38649488-38654487 Glycine max
Glyma.07G214300 10.0kb upstream 10.0kb upstream 12176 true Chr07: 38637312-38649487 Glycine max
Glyma.07G214300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 38637312-38647311 Glycine max
Glyma.07G214300 10.0kb downstream 10.0kb downstream 12176 true Chr07: 38647312-38659487 Glycine max
Glyma.07G214300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 38649488-38659487 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306791 5265 Fabidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.38385 0.0 12.6664   High
cufflinks 1.5591 0.0 5.21439   Low
cufflinks 2.61647 0.0 8.21703    
cufflinks 5.58157 0.0 15.7325   High
cufflinks 2.54818 0.0 7.85732    
cufflinks 1.92532 0.0 6.21546    
cufflinks 2.44445 0.0 7.63281    
cufflinks 4.02317 0.0 11.8108    
cufflinks 2.62947 0.0 8.14141    
cufflinks 1.285        
cufflinks 0.431       Low
cufflinks 2.32       High
cufflinks 2.081       High
cufflinks 0.719        
cufflinks 0.956        
cufflinks 1.385        
cufflinks 0.751        
cufflinks 0.869        
cufflinks 1.97       High
cufflinks 1.022        
cufflinks 0.647       Low
cufflinks 1.352        
cufflinks 2.307       High
cufflinks 0.532       Low
cufflinks 1.534        
cufflinks 1.205        

0 Strain