Gene : Glyma.07G247900 G. max Wm82.a2.v1
Defline:  (1 of 6) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  2479
Name:  ? Glyma.07G247900 Secondary Identifier:  ? PAC:30491400
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G247900 0.5kb upstream 0.5kb upstream 4438 true Chr07: 42634999-42639436 Glycine max
Glyma.07G247900 0.5kb upstream 0.5kb upstream 500 false Chr07: 42634999-42635498 Glycine max
Glyma.07G247900 0.5kb downstream 0.5kb downstream 4438 true Chr07: 42635499-42639936 Glycine max
Glyma.07G247900 0.5kb downstream 0.5kb downstream 500 false Chr07: 42639437-42639936 Glycine max
Glyma.07G247900 1.0kb upstream 1.0kb upstream 4938 true Chr07: 42634499-42639436 Glycine max
Glyma.07G247900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 42634499-42635498 Glycine max
Glyma.07G247900 1.0kb downstream 1.0kb downstream 4938 true Chr07: 42635499-42640436 Glycine max
Glyma.07G247900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 42639437-42640436 Glycine max
Glyma.07G247900 2.0kb upstream 2.0kb upstream 5938 true Chr07: 42633499-42639436 Glycine max
Glyma.07G247900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 42633499-42635498 Glycine max
Glyma.07G247900 2.0kb downstream 2.0kb downstream 5938 true Chr07: 42635499-42641436 Glycine max
Glyma.07G247900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 42639437-42641436 Glycine max
Glyma.07G247900 5.0kb upstream 5.0kb upstream 8938 true Chr07: 42630499-42639436 Glycine max
Glyma.07G247900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 42630499-42635498 Glycine max
Glyma.07G247900 5.0kb downstream 5.0kb downstream 8938 true Chr07: 42635499-42644436 Glycine max
Glyma.07G247900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 42639437-42644436 Glycine max
Glyma.07G247900 10.0kb upstream 10.0kb upstream 13938 true Chr07: 42625499-42639436 Glycine max
Glyma.07G247900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 42625499-42635498 Glycine max
Glyma.07G247900 10.0kb downstream 10.0kb downstream 13938 true Chr07: 42635499-42649436 Glycine max
Glyma.07G247900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 42639437-42649436 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122303941 5265 Fabidae View MSA
124061636 5270 Rosid View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.9091 0.0 38.9334   Low
cufflinks 14.8022 0.0 67.2093    
cufflinks 15.2256 0.0 69.727    
cufflinks 21.2192 0.0 98.5182 High High
cufflinks 10.4804 0.0 48.4608    
cufflinks 19.1998 0.0 77.41    
cufflinks 8.21706 0.0 35.3917   Low
cufflinks 18.7972 0.0 82.9056    
cufflinks 15.2655 0.0 69.5059    
cufflinks 0.644        
cufflinks 0.338        
cufflinks 0.879       High
cufflinks 0.463        
cufflinks 0.294       Low
cufflinks 0.198       Low
cufflinks 0.392        
cufflinks 0.668        
cufflinks 0.884       High
cufflinks 0.918       High
cufflinks 0.435        
cufflinks 0.392        
cufflinks 0.371        
cufflinks 0.222       Low
cufflinks 0.622        
cufflinks 0.434        
cufflinks 0.839       High

0 Strain