Gene : Glyma.08G024200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR13215:SF6 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP Genomic Order:  242
Name:  ? Glyma.08G024200 Secondary Identifier:  ? PAC:30539093
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G024200 0.5kb upstream 0.5kb upstream 4743 true Chr08: 1930416-1935158 Glycine max
Glyma.08G024200 0.5kb upstream 0.5kb upstream 500 false Chr08: 1930416-1930915 Glycine max
Glyma.08G024200 0.5kb downstream 0.5kb downstream 4743 true Chr08: 1930916-1935658 Glycine max
Glyma.08G024200 0.5kb downstream 0.5kb downstream 500 false Chr08: 1935159-1935658 Glycine max
Glyma.08G024200 1.0kb upstream 1.0kb upstream 5243 true Chr08: 1929916-1935158 Glycine max
Glyma.08G024200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1929916-1930915 Glycine max
Glyma.08G024200 1.0kb downstream 1.0kb downstream 5243 true Chr08: 1930916-1936158 Glycine max
Glyma.08G024200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1935159-1936158 Glycine max
Glyma.08G024200 2.0kb upstream 2.0kb upstream 6243 true Chr08: 1928916-1935158 Glycine max
Glyma.08G024200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1928916-1930915 Glycine max
Glyma.08G024200 2.0kb downstream 2.0kb downstream 6243 true Chr08: 1930916-1937158 Glycine max
Glyma.08G024200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1935159-1937158 Glycine max
Glyma.08G024200 5.0kb upstream 5.0kb upstream 9243 true Chr08: 1925916-1935158 Glycine max
Glyma.08G024200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1925916-1930915 Glycine max
Glyma.08G024200 5.0kb downstream 5.0kb downstream 9243 true Chr08: 1930916-1940158 Glycine max
Glyma.08G024200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1935159-1940158 Glycine max
Glyma.08G024200 10.0kb upstream 10.0kb upstream 14243 true Chr08: 1920916-1935158 Glycine max
Glyma.08G024200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1920916-1930915 Glycine max
Glyma.08G024200 10.0kb downstream 10.0kb downstream 14243 true Chr08: 1930916-1945158 Glycine max
Glyma.08G024200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1935159-1945158 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308178 5265 Fabidae View MSA
124066656 5270 Rosid View MSA
123749288 5271 Pentapetalae View MSA
122790546 5272 Eudicot View MSA
122043186 5273 Angiosperm View MSA
121348005 5274 Embryophyte View MSA
123427584 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.4423 0.0 39.4792    
cufflinks 19.9123 0.0 53.5188    
cufflinks 10.7167 0.0 30.0171   Low
cufflinks 17.2206 0.0 46.5432    
cufflinks 20.6189 0.0 55.3505 High  
cufflinks 27.9153 0.0 74.4864 High High
cufflinks 31.7842 0.0 84.8145 High High
cufflinks 16.7216 0.0 45.2484    
cufflinks 22.3527 0.0 59.8506 High  
cufflinks 4.408        
cufflinks 4.884        
cufflinks 4.333        
cufflinks 6.999        
cufflinks 8.189     High High
cufflinks 3.653       Low
cufflinks 6.695        
cufflinks 2.906       Low
cufflinks 4.872        
cufflinks 4.774        
cufflinks 6.525        
cufflinks 4.238        
cufflinks 6.537        
cufflinks 6.585        
cufflinks 5.52        
cufflinks 7.659     High High
cufflinks 4.852        

0 Strain