Gene : Glyma.08G040300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11937:SF235 - ACTIN-LIKE PROTEIN 6A Genomic Order:  403
Name:  ? Glyma.08G040300 Secondary Identifier:  ? PAC:30537194
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G040300 0.5kb upstream 0.5kb upstream 7312 true Chr08: 3171313-3178624 Glycine max
Glyma.08G040300 0.5kb upstream 0.5kb upstream 500 false Chr08: 3178125-3178624 Glycine max
Glyma.08G040300 0.5kb downstream 0.5kb downstream 7312 true Chr08: 3170813-3178124 Glycine max
Glyma.08G040300 0.5kb downstream 0.5kb downstream 500 false Chr08: 3170813-3171312 Glycine max
Glyma.08G040300 1.0kb upstream 1.0kb upstream 7812 true Chr08: 3171313-3179124 Glycine max
Glyma.08G040300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3178125-3179124 Glycine max
Glyma.08G040300 1.0kb downstream 1.0kb downstream 7812 true Chr08: 3170313-3178124 Glycine max
Glyma.08G040300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3170313-3171312 Glycine max
Glyma.08G040300 2.0kb upstream 2.0kb upstream 8812 true Chr08: 3171313-3180124 Glycine max
Glyma.08G040300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3178125-3180124 Glycine max
Glyma.08G040300 2.0kb downstream 2.0kb downstream 8812 true Chr08: 3169313-3178124 Glycine max
Glyma.08G040300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3169313-3171312 Glycine max
Glyma.08G040300 5.0kb upstream 5.0kb upstream 11812 true Chr08: 3171313-3183124 Glycine max
Glyma.08G040300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3178125-3183124 Glycine max
Glyma.08G040300 5.0kb downstream 5.0kb downstream 11812 true Chr08: 3166313-3178124 Glycine max
Glyma.08G040300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3166313-3171312 Glycine max
Glyma.08G040300 10.0kb upstream 10.0kb upstream 16812 true Chr08: 3171313-3188124 Glycine max
Glyma.08G040300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3178125-3188124 Glycine max
Glyma.08G040300 10.0kb downstream 10.0kb downstream 16812 true Chr08: 3161313-3178124 Glycine max
Glyma.08G040300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3161313-3171312 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122240341 5265 Fabidae Singleton cluster - no MSA
124063804 5270 Rosid View MSA
123743517 5271 Pentapetalae View MSA
122788412 5272 Eudicot View MSA
122043885 5273 Angiosperm View MSA
121347268 5274 Embryophyte View MSA
123426556 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.75318 0.0 8.54783   Low
cufflinks 12.7531 0.0 34.1287   High
cufflinks 4.65153 0.0 13.3836    
cufflinks 7.55903 0.0 20.7848    
cufflinks 9.64027 0.0 26.106    
cufflinks 7.33186 0.0 20.2059    
cufflinks 10.6576 0.0 28.7269    
cufflinks 8.10615 0.0 22.1566    
cufflinks 8.61094 0.0 23.4548    
cufflinks 1.154        
cufflinks 0.449       Low
cufflinks 1.454        
cufflinks 2.571       High
cufflinks 2.878       High
cufflinks 1.117        
cufflinks 1.277        
cufflinks 0.998        
cufflinks 2.111        
cufflinks 3.043       High
cufflinks 1.075        
cufflinks 0.67       Low
cufflinks 1.245        
cufflinks 1.813        
cufflinks 0.516       Low
cufflinks 1.161        
cufflinks 0.904        

0 Strain