Gene : Glyma.08G041100 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31874:SF1 - CCT MOTIF FAMILY PROTEIN-RELATED Genomic Order:  411
Name:  ? Glyma.08G041100 Secondary Identifier:  ? PAC:30539831
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G041100 0.5kb upstream 0.5kb upstream 2666 true Chr08: 3253752-3256417 Glycine max
Glyma.08G041100 0.5kb upstream 0.5kb upstream 500 false Chr08: 3253752-3254251 Glycine max
Glyma.08G041100 0.5kb downstream 0.5kb downstream 2666 true Chr08: 3254252-3256917 Glycine max
Glyma.08G041100 0.5kb downstream 0.5kb downstream 500 false Chr08: 3256418-3256917 Glycine max
Glyma.08G041100 1.0kb upstream 1.0kb upstream 3166 true Chr08: 3253252-3256417 Glycine max
Glyma.08G041100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3253252-3254251 Glycine max
Glyma.08G041100 1.0kb downstream 1.0kb downstream 3166 true Chr08: 3254252-3257417 Glycine max
Glyma.08G041100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3256418-3257417 Glycine max
Glyma.08G041100 2.0kb upstream 2.0kb upstream 4166 true Chr08: 3252252-3256417 Glycine max
Glyma.08G041100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3252252-3254251 Glycine max
Glyma.08G041100 2.0kb downstream 2.0kb downstream 4166 true Chr08: 3254252-3258417 Glycine max
Glyma.08G041100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3256418-3258417 Glycine max
Glyma.08G041100 5.0kb upstream 5.0kb upstream 7166 true Chr08: 3249252-3256417 Glycine max
Glyma.08G041100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3249252-3254251 Glycine max
Glyma.08G041100 5.0kb downstream 5.0kb downstream 7166 true Chr08: 3254252-3261417 Glycine max
Glyma.08G041100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3256418-3261417 Glycine max
Glyma.08G041100 10.0kb upstream 10.0kb upstream 12166 true Chr08: 3244252-3256417 Glycine max
Glyma.08G041100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3244252-3254251 Glycine max
Glyma.08G041100 10.0kb downstream 10.0kb downstream 12166 true Chr08: 3254252-3266417 Glycine max
Glyma.08G041100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3256418-3266417 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316208 5265 Fabidae View MSA
124061495 5270 Rosid View MSA
123743712 5271 Pentapetalae View MSA
122787534 5272 Eudicot View MSA
122046214 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121351074 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.955 0.0 104.912 High High
cufflinks 3.41966 0.0 10.3478    
cufflinks 2.16114 0.0 6.95791    
cufflinks 4.66302 0.0 13.5037    
cufflinks 0.157052 0.0 0.610027 Low Low
cufflinks 0.0729435 0.0 0.291457 Low Low
cufflinks 2.82624 0.0 8.75697    
cufflinks 4.44498 0.0 12.9634    
cufflinks 0.173842 0.0 0.672412 Low Low
cufflinks 5.044        
cufflinks 0.068       Low
cufflinks 4.084        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.221        
cufflinks 28.486     High  
cufflinks 0.078       Low
cufflinks 4.031        
cufflinks 4.406        
cufflinks 45.457     High High
cufflinks 0.037     Low Low
cufflinks 47.894     High High
cufflinks 28.245     High  
cufflinks 0.044     Low Low
cufflinks 38.436     High High
cufflinks 0.062     Low Low

0 Strain