Gene : Glyma.08G085800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23063:SF2 - PROTEIN ACL-5, ISOFORM A Genomic Order:  858
Name:  ? Glyma.08G085800 Secondary Identifier:  ? PAC:30539446
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY0-1319 Glycine max pathologic  
Gmax PWY4FS-7 Glycine max pathologic  
Gmax PWY-7411 Glycine max pathologic  
Gmax TRIGLSYN-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G085800 0.5kb upstream 0.5kb upstream 7133 true Chr08: 6465395-6472527 Glycine max
Glyma.08G085800 0.5kb upstream 0.5kb upstream 500 false Chr08: 6465395-6465894 Glycine max
Glyma.08G085800 0.5kb downstream 0.5kb downstream 7133 true Chr08: 6465895-6473027 Glycine max
Glyma.08G085800 0.5kb downstream 0.5kb downstream 500 false Chr08: 6472528-6473027 Glycine max
Glyma.08G085800 1.0kb upstream 1.0kb upstream 7633 true Chr08: 6464895-6472527 Glycine max
Glyma.08G085800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6464895-6465894 Glycine max
Glyma.08G085800 1.0kb downstream 1.0kb downstream 7633 true Chr08: 6465895-6473527 Glycine max
Glyma.08G085800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6472528-6473527 Glycine max
Glyma.08G085800 2.0kb upstream 2.0kb upstream 8633 true Chr08: 6463895-6472527 Glycine max
Glyma.08G085800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6463895-6465894 Glycine max
Glyma.08G085800 2.0kb downstream 2.0kb downstream 8633 true Chr08: 6465895-6474527 Glycine max
Glyma.08G085800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6472528-6474527 Glycine max
Glyma.08G085800 5.0kb upstream 5.0kb upstream 11633 true Chr08: 6460895-6472527 Glycine max
Glyma.08G085800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6460895-6465894 Glycine max
Glyma.08G085800 5.0kb downstream 5.0kb downstream 11633 true Chr08: 6465895-6477527 Glycine max
Glyma.08G085800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6472528-6477527 Glycine max
Glyma.08G085800 10.0kb upstream 10.0kb upstream 16633 true Chr08: 6455895-6472527 Glycine max
Glyma.08G085800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6455895-6465894 Glycine max
Glyma.08G085800 10.0kb downstream 10.0kb downstream 16633 true Chr08: 6465895-6482527 Glycine max
Glyma.08G085800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6472528-6482527 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254663 5265 Fabidae View MSA
124065139 5270 Rosid View MSA
123751222 5271 Pentapetalae View MSA
122796143 5272 Eudicot View MSA
122045469 5273 Angiosperm View MSA
121344945 5274 Embryophyte View MSA
123427569 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.5116 0.0 45.7945   Low
cufflinks 17.6891 0.0 54.6333    
cufflinks 21.1161 0.0 82.3463 High  
cufflinks 20.0583 0.0 62.3616 High  
cufflinks 16.6004 0.0 49.9815    
cufflinks 23.6953 0.0 80.9539 High High
cufflinks 26.0885 0.0 80.3407 High High
cufflinks 19.3511 0.0 66.1653    
cufflinks 17.7165 0.0 55.2206    
cufflinks 1.269        
cufflinks 0.707        
cufflinks 1.309        
cufflinks 1.433       High
cufflinks 1.404       High
cufflinks 0.485       Low
cufflinks 0.865        
cufflinks 0.723        
cufflinks 1.495       High
cufflinks 1.28        
cufflinks 0.755        
cufflinks 0.652       Low
cufflinks 0.819        
cufflinks 1.026        
cufflinks 1.04        
cufflinks 0.771        
cufflinks 0.892        

0 Strain