Gene : Glyma.08G122300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33596:SF3 - COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED Genomic Order:  1223
Name:  ? Glyma.08G122300 Secondary Identifier:  ? PAC:30537293
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G122300 0.5kb upstream 0.5kb upstream 2389 true Chr08: 9434891-9437279 Glycine max
Glyma.08G122300 0.5kb upstream 0.5kb upstream 500 false Chr08: 9434891-9435390 Glycine max
Glyma.08G122300 0.5kb downstream 0.5kb downstream 2389 true Chr08: 9435391-9437779 Glycine max
Glyma.08G122300 0.5kb downstream 0.5kb downstream 500 false Chr08: 9437280-9437779 Glycine max
Glyma.08G122300 1.0kb upstream 1.0kb upstream 2889 true Chr08: 9434391-9437279 Glycine max
Glyma.08G122300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9434391-9435390 Glycine max
Glyma.08G122300 1.0kb downstream 1.0kb downstream 2889 true Chr08: 9435391-9438279 Glycine max
Glyma.08G122300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9437280-9438279 Glycine max
Glyma.08G122300 2.0kb upstream 2.0kb upstream 3889 true Chr08: 9433391-9437279 Glycine max
Glyma.08G122300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9433391-9435390 Glycine max
Glyma.08G122300 2.0kb downstream 2.0kb downstream 3889 true Chr08: 9435391-9439279 Glycine max
Glyma.08G122300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9437280-9439279 Glycine max
Glyma.08G122300 5.0kb upstream 5.0kb upstream 6889 true Chr08: 9430391-9437279 Glycine max
Glyma.08G122300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9430391-9435390 Glycine max
Glyma.08G122300 5.0kb downstream 5.0kb downstream 6889 true Chr08: 9435391-9442279 Glycine max
Glyma.08G122300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9437280-9442279 Glycine max
Glyma.08G122300 10.0kb upstream 10.0kb upstream 11889 true Chr08: 9425391-9437279 Glycine max
Glyma.08G122300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9425391-9435390 Glycine max
Glyma.08G122300 10.0kb downstream 10.0kb downstream 11889 true Chr08: 9435391-9447279 Glycine max
Glyma.08G122300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9437280-9447279 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026496 5273 Angiosperm View MSA
122303130 5265 Fabidae View MSA
124068573 5270 Rosid View MSA
123739751 5271 Pentapetalae View MSA
122786208 5272 Eudicot View MSA
121350668 5274 Embryophyte View MSA
123381843 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.5927 0.0 148.541 High High
cufflinks 25.9115 0.0 90.67 High  
cufflinks 21.6452 0.0 77.4557 High  
cufflinks 27.3693 0.0 95.1339 High  
cufflinks 20.3854 0.0 73.4801 High Low
cufflinks 27.0918 0.0 94.3336 High  
cufflinks 40.1253 0.0 136.726 High High
cufflinks 33.2201 0.0 113.745 High  
cufflinks 21.4939 0.0 76.7135 High  
cufflinks 4.504        
cufflinks 2.732       Low
cufflinks 3.844        
cufflinks 3.209        
cufflinks 2.694       Low
cufflinks 3.135        
cufflinks 4.794       High
cufflinks 2.44       Low
cufflinks 3.819        
cufflinks 4.527        
cufflinks 5.201       High
cufflinks 3.178        
cufflinks 5.625       High
cufflinks 3.8        
cufflinks 2.847        
cufflinks 4.603        
cufflinks 2.668       Low

0 Strain