Gene : Glyma.08G113100 G. max Wm82.a2.v1
Defline:  (1 of 2) PF13812//PF14432 - Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1131
Name:  ? Glyma.08G113100 Secondary Identifier:  ? PAC:30536797
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G113100 0.5kb upstream 0.5kb upstream 4742 true Chr08: 8681498-8686239 Glycine max
Glyma.08G113100 0.5kb upstream 0.5kb upstream 500 false Chr08: 8681498-8681997 Glycine max
Glyma.08G113100 0.5kb downstream 0.5kb downstream 4742 true Chr08: 8681998-8686739 Glycine max
Glyma.08G113100 0.5kb downstream 0.5kb downstream 500 false Chr08: 8686240-8686739 Glycine max
Glyma.08G113100 1.0kb upstream 1.0kb upstream 5242 true Chr08: 8680998-8686239 Glycine max
Glyma.08G113100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 8680998-8681997 Glycine max
Glyma.08G113100 1.0kb downstream 1.0kb downstream 5242 true Chr08: 8681998-8687239 Glycine max
Glyma.08G113100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 8686240-8687239 Glycine max
Glyma.08G113100 2.0kb upstream 2.0kb upstream 6242 true Chr08: 8679998-8686239 Glycine max
Glyma.08G113100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 8679998-8681997 Glycine max
Glyma.08G113100 2.0kb downstream 2.0kb downstream 6242 true Chr08: 8681998-8688239 Glycine max
Glyma.08G113100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 8686240-8688239 Glycine max
Glyma.08G113100 5.0kb upstream 5.0kb upstream 9242 true Chr08: 8676998-8686239 Glycine max
Glyma.08G113100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 8676998-8681997 Glycine max
Glyma.08G113100 5.0kb downstream 5.0kb downstream 9242 true Chr08: 8681998-8691239 Glycine max
Glyma.08G113100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 8686240-8691239 Glycine max
Glyma.08G113100 10.0kb upstream 10.0kb upstream 14242 true Chr08: 8671998-8686239 Glycine max
Glyma.08G113100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 8671998-8681997 Glycine max
Glyma.08G113100 10.0kb downstream 10.0kb downstream 14242 true Chr08: 8681998-8696239 Glycine max
Glyma.08G113100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 8686240-8696239 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299130 5265 Fabidae View MSA
124066388 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.87229 0.0 27.0365    
cufflinks 6.27631 0.0 22.1357    
cufflinks 5.97018 0.0 21.1094   Low
cufflinks 6.23283 0.0 21.9044    
cufflinks 9.26749 0.0 31.397   High
cufflinks 7.86063 0.0 27.052    
cufflinks 6.88471 0.0 24.0003    
cufflinks 6.20812 0.0 21.8567    
cufflinks 9.07136 0.0 30.7849   High
cufflinks 2.071        
cufflinks 1.147       Low
cufflinks 3.061        
cufflinks 4.374       High
cufflinks 5.756       High
cufflinks 1.205       Low
cufflinks 1.898        
cufflinks 1.267       Low
cufflinks 2.841        
cufflinks 2.574        
cufflinks 1.946        
cufflinks 1.244       Low
cufflinks 2.013        
cufflinks 2.748        
cufflinks 1.638        
cufflinks 1.877        
cufflinks 1.352        

0 Strain